View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20596_low_10 (Length: 437)
Name: NF20596_low_10
Description: NF20596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20596_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 18714573 - 18714993
Alignment:
| Q |
1 |
tcaatgagcccaaggatcctcatcaccaccaacaagaataacaacacacgtcggataccgagttttnnnnnnnnnnnnnnnncaataacaacacacggtg |
100 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
18714573 |
tcaatgagcccaaggagcctcatcaccaccaacaagaataacaacacacgtcggataccgagtttacaaaaaaaaataa----aataacaacacacggtg |
18714668 |
T |
|
| Q |
101 |
caggaggtggttattacatccttctcatcgttacacagtgcgggaggcttacaactttctcaccaacaatggtaacccggtggacaggtcgatggtagtt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18714669 |
caggaggtggttattacatccttctcatcgttacacagttcgggaggcttacaactttctcaccaacaatggtaacccggtggacaggtcgatggtagtt |
18714768 |
T |
|
| Q |
201 |
gatgtatggcacaagtttatcccttcaaaggtgtctgtttgtggcgcttcctacagaatagattgcccacacgagataatttggtgcggcgacgtgctct |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
18714769 |
gatgtatggcacaagtttatcccttcaaaggtgtctgttcgtggcgcttcctacggaatagattgcccacacgagataatttggtgcggcgacgtgcttt |
18714868 |
T |
|
| Q |
301 |
gctgatatcagactcggtttgtgtgtttggttgcggtgaaccagaaaccgcatcccatttattttttggttgcaacacttttagtttgctttggtcccat |
400 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18714869 |
gctgatatctgactcggtttgtgtgtttggttgcggtgaaccagaaaccgcatcccatttattttttggttgcaacacttttagtttgctttggtcccat |
18714968 |
T |
|
| Q |
401 |
gtgttacattggatgggtctttctg |
425 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
18714969 |
gtgttacattggatgggtctttctg |
18714993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 103 - 230
Target Start/End: Complemental strand, 46610083 - 46609956
Alignment:
| Q |
103 |
ggaggtggttattacatccttctcatcgttacacagtgcgggaggcttacaactttctcaccaacaatggtaacccggtggacaggtcgatggtagttga |
202 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||| |||||||| |||||| |||||||||||||||| |||||||||||| | ||||||||||||| ||| |
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| T |
46610083 |
ggaggtggttactacatccttctcatggttacacggtgcgggaagcttaccactttctcaccaacaacggtaacccggtgtataggtcgatggtagatga |
46609984 |
T |
|
| Q |
203 |
tgtatggcacaagtttatcccttcaaag |
230 |
Q |
| |
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||||||||| |||| ||| ||||||||| |
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| T |
46609983 |
tgtatggcataagtatattccttcaaag |
46609956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 103 - 236
Target Start/End: Complemental strand, 6519461 - 6519328
Alignment:
| Q |
103 |
ggaggtggttattacatccttctcatcgttacacagtgcgggaggcttacaactttctcaccaacaatggtaacccggtggacaggtcgatggtagttga |
202 |
Q |
| |
|
|||||||| | ||| |||||||| || |||||| |||||||| |||||| ||||||||| |||| |||| |||| |||||| ||||| ||| | ||| |
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| T |
6519461 |
ggaggtggcttttaaatccttctaatggttacaaggtgcgggaagcttactgctttctcacttacaacggtagcccgatggacaagtcgacggtggatga |
6519362 |
T |
|
| Q |
203 |
tgtatggcacaagtttatcccttcaaaggtgtct |
236 |
Q |
| |
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||| ||||| ||| ||| ||||||||||||||| |
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| T |
6519361 |
tgtttggcataagagtattccttcaaaggtgtct |
6519328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 103 - 427
Target Start/End: Original strand, 12237613 - 12237941
Alignment:
| Q |
103 |
ggaggtggttattacatccttctcatcgttacacagtgcgggaggcttacaactttctcaccaacaatggtaacccggtggacaggtcgatggtagttga |
202 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||||| |||||| | || |||||||| ||||||||||||| ||||| ||||||| |||||| ||| |
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| T |
12237613 |
ggagatggttattacatccttctcatggttacacagtacgggagtcatatcgttttctcacaaacaatggtaacctggtgggcaggtcgttggtagatga |
12237712 |
T |
|
| Q |
203 |
tgtatggcacaagtttatcccttcaaaggtgtctgttt----gtggcgcttcctacagaatagattgcccacacgagataatttggtgcggcgacgtgct |
298 |
Q |
| |
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||| ||||| |||| ||||||||| ||||| ||| | | ||||||| | || ||| | |||| | || ||||||||||||| | |||||| ||| |
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|
| T |
12237713 |
tgtgtggcataagtctatcccttcgaaggtatctttgttcgcgtggcgccttctctggaacaaattgtctactagagataatttggttcagcgacgagct |
12237812 |
T |
|
| Q |
299 |
ctgctgatatcagactcggtttgtgtgtttggttgcggtgaaccagaaaccgcatcccatttattttttggttgcaacacttttagtttgctttggtccc |
398 |
Q |
| |
|
|||| ||||| || | ||||| |||| ||| |||||| || ||||||| || ||||||||| |||||||| || || || | | |||||||| | |
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| T |
12237813 |
ttgcttatatctcacgctgtttgcgtgtctggctgcggtcaaacagaaactgcggtccatttattctttggttgtaatacgttcaacgtactttggtcgc |
12237912 |
T |
|
| Q |
399 |
atgtgttacattggatgggtctttctgtg |
427 |
Q |
| |
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|||||||||| ||| ||||||| |||||| |
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| T |
12237913 |
atgtgttacaatggttgggtctctctgtg |
12237941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 314 - 425
Target Start/End: Original strand, 9594768 - 9594879
Alignment:
| Q |
314 |
tcggtttgtgtgtttggttgcggtgaaccagaaaccgcatcccatttattttttggttgcaacacttttagtttgctttggtcccatgtgttacattgga |
413 |
Q |
| |
|
||||||||||| | ||||||||||||| || |||||| | |||||||||||||| ||||||||| | | |||||||||||| | ||||||||||||||| |
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| T |
9594768 |
tcggtttgtgtatctggttgcggtgaatcaaaaaccgtagcccatttattttttagttgcaacattctcagtttgctttggactcatgtgttacattggt |
9594867 |
T |
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| Q |
414 |
tgggtctttctg |
425 |
Q |
| |
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|| |||| |||| |
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|
| T |
9594868 |
tgagtctctctg |
9594879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 194
Target Start/End: Original strand, 25720710 - 25720801
Alignment:
| Q |
103 |
ggaggtggttattacatccttctcatcgttacacagtgcgggaggcttacaactttctcaccaacaatggtaacccggtggacaggtcgatg |
194 |
Q |
| |
|
||||||||||| || ||||||||||| ||||||| || |||| |||||| |||||| ||||| ||||||||| ||||| ||||||||| |
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| T |
25720710 |
ggaggtggttactagatccttctcatggttacacggttagggaagcttaccgctttcttaccaataatggtaactttgtggataggtcgatg |
25720801 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 235
Target Start/End: Original strand, 20122861 - 20122913
Alignment:
| Q |
183 |
gacaggtcgatggtagttgatgtatggcacaagtttatcccttcaaaggtgtc |
235 |
Q |
| |
|
||||||||| |||| | |||||| |||||||||||||| || ||||||||||| |
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|
| T |
20122861 |
gacaggtcgttggttgatgatgtgtggcacaagtttattccctcaaaggtgtc |
20122913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 338
Target Start/End: Original strand, 33412252 - 33412288
Alignment:
| Q |
302 |
ctgatatcagactcggtttgtgtgtttggttgcggtg |
338 |
Q |
| |
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|||||| ||||||||||||||||||| |||||||||| |
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| T |
33412252 |
ctgatagcagactcggtttgtgtgttaggttgcggtg |
33412288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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