View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20596_low_11 (Length: 422)
Name: NF20596_low_11
Description: NF20596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20596_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 202 - 406
Target Start/End: Original strand, 4144347 - 4144554
Alignment:
| Q |
202 |
gttgtccctaatagttggtttatgttcatgtcagtttttgtccaagttatatccatgcattatgtttaatctcttctcttctcattgtttaactatacac |
301 |
Q |
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| T |
4144347 |
gttgtccctaatagttggtttatgttcatgtcagtttttgtccaagttatatccatgcattatgtttaatctcttctcttctcattgtttaactatacac |
4144446 |
T |
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| Q |
302 |
cgctaaa---tagtaacatatagtaaaagattaatttacaatatataaaactctgctataattaattaaaaatatatcagtttaaaatatgcatcatgca |
398 |
Q |
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| T |
4144447 |
tgctaaatagtagtaacatatagtaaaagattaatttacaatatataaaactctgctataattaattaaaaatatatcagtttaaaatatgcatcatgca |
4144546 |
T |
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| Q |
399 |
tgtgcttg |
406 |
Q |
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|||||||| |
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| T |
4144547 |
tgtgcttg |
4144554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 14 - 136
Target Start/End: Original strand, 4144158 - 4144281
Alignment:
| Q |
14 |
ttctagttgttgtatgcgaattgcaaatttatactctgttaaataacaagtttcaatttaaattttgaaatattttaggggttaagtaagtgtta-tttc |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4144158 |
ttctagttgttgtatgcgaattgcaaatttatactctgttaaataacaagtttcaatttaaattttgaaatattttaggggttaagtaagtgttattttc |
4144257 |
T |
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| Q |
113 |
ttttttgaaggagggttaaataag |
136 |
Q |
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| T |
4144258 |
ttttttgaaggagggttaaataag |
4144281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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