View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20596_low_12 (Length: 415)
Name: NF20596_low_12
Description: NF20596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20596_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 11 - 398
Target Start/End: Complemental strand, 4387408 - 4387001
Alignment:
| Q |
11 |
cagagaaactatcatttagacgaagataaaatacatttgtaagtgttttttaagttcaaaggtttttctttagattggatagcatccgtttcatcctaaa |
110 |
Q |
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| T |
4387408 |
cagagaaactatcatttagacgaagataaaatacatttgtaagcgttctttaaattcaaagatttttctttagattgaatagcatccgtttcatcctaaa |
4387309 |
T |
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| Q |
111 |
attttatta---------------------tagaaacaggaacatgcattataggataggatatggtaaaggagcactacaggccaaaagactgaaaaat |
189 |
Q |
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| T |
4387308 |
attttattaaagaaaaaagataaattattatagaaacaggaacatgcattataggataggatatggtaaaggagcaccacaggccaaaagactgaaaaat |
4387209 |
T |
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| Q |
190 |
tgagggacaagtaaatagaagtactatatatcgcacttatggacagaacaaagtgaagagggaaagagtgtgtggagcattagatgccaaaagtagtggt |
289 |
Q |
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| T |
4387208 |
tgaggggcaagtaaatagaagtactatatatcgcacttatggacagaacaaagtgaagagggaaagagtgtgt-gagcattagatgccaaaagtagtggt |
4387110 |
T |
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| Q |
290 |
cctaagtatttctatggtcaaaatcccacatcaaaaatcagtcaaccagtatccattattcttttcctattttagtgtaatggaagtaagataattaagt |
389 |
Q |
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| T |
4387109 |
cctaagtatttctatggtcaaaatcccacatcaaaaatcagtcaaccagtatccattattcttttcctattttagtgtaatggaagtaagataattaagt |
4387010 |
T |
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| Q |
390 |
actacatct |
398 |
Q |
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| T |
4387009 |
actacatct |
4387001 |
T |
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