View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20596_low_13 (Length: 406)
Name: NF20596_low_13
Description: NF20596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20596_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 142; Significance: 2e-74; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 244 - 389
Target Start/End: Original strand, 27258219 - 27258364
Alignment:
| Q |
244 |
acttcatcagacatctgtgaacttcattcgattgattatattcatacattccttccatcactttttgaaaaattcttttgatatttcattttgcataata |
343 |
Q |
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| T |
27258219 |
acttcatcagacatctgtgaacttcattcgattgattatattcatacattccttccatcgctttttgaaaaattcttttgatatttcattttgcataata |
27258318 |
T |
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| Q |
344 |
acttctttaagaagtttatccaaaaactattaaaatatcttattta |
389 |
Q |
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| T |
27258319 |
acttctttaagaagtttatccaaaaactattaaaatatcttattta |
27258364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 20 - 156
Target Start/End: Original strand, 27258026 - 27258164
Alignment:
| Q |
20 |
gagaagagtgctatctagaatggaggatgtggacggatgtcttgtcggagtggagcaaggtgtaaccattctccttaatgcgattcattacggagaaagg |
119 |
Q |
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| T |
27258026 |
gagaagagtgctatctagaatggaggatgtggacggatgtcttgtcggagtggagcaaggcgtaaccattctccttaatgcaattcattacggagaaagg |
27258125 |
T |
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| Q |
120 |
aagaaatttgaaacatcata--ttgatatgatagattga |
156 |
Q |
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| T |
27258126 |
aagaaatttgaaacatcatactttgatatgatagattga |
27258164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 266 - 368
Target Start/End: Original strand, 27256853 - 27256955
Alignment:
| Q |
266 |
ttcattcgattgattatattcatacattccttccatcactttttgaaaaattcttttgatatttcattttgcataataacttctttaagaagtttatcca |
365 |
Q |
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| T |
27256853 |
ttcattcgattgattatattcatacattccttccttcactttttgaaagattcttttgatatttcattttgcataataacttctttgagaagtttatcca |
27256952 |
T |
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| Q |
366 |
aaa |
368 |
Q |
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||| |
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| T |
27256953 |
aaa |
27256955 |
T |
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