View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20596_low_14 (Length: 399)

Name: NF20596_low_14
Description: NF20596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20596_low_14
NF20596_low_14
[»] chr8 (3 HSPs)
chr8 (1-383)||(36995698-36996082)
chr8 (149-383)||(37005790-37006024)
chr8 (1-125)||(37005636-37005760)
[»] chr4 (7 HSPs)
chr4 (151-383)||(13684134-13684366)
chr4 (232-379)||(22192031-22192182)
chr4 (1-125)||(13684404-13684528)
chr4 (3-118)||(22191838-22191953)
chr4 (331-384)||(26648930-26648983)
chr4 (323-383)||(2749940-2750000)
chr4 (182-244)||(26648784-26648846)
[»] chr7 (2 HSPs)
chr7 (149-383)||(8598506-8598733)
chr7 (2-110)||(8598207-8598315)


Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Original strand, 36995698 - 36996082
Alignment:
Q  1 accctcagcgtcaagaaaacctttttcacaggcacgctcaagatcaaatacatcccccgggtgagccttacaaactaagtgaaatcgatctgaataaact 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36995698 accctcagcgtcaagaaaaccattttcacaggcacgctcaagatcaaatacatcccccgggtgagccttacaaactaagtgaaatcgatctgaataaact 36995797  T
Q  101 caaatgaaatggttagtaatagtaaagcnnnnnnnnnnnnn--aaataataaaaaacctaccaaaacaatcagttcgcccggggtcaagggggtgaatta 198  Q
    ||||||||||||||||||||||||||||               |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36995798 caaatgaaatggttagtaatagtaaagctttttttttttttttaaataataaaaaacctaccaaaacaatcagttcgcccggggtcaagggggtgaatta 36995897  T
Q  199 tcgctaatgtgttaagtgcataaaagttcaacattggagtgttgtctatgtcagcaaataactcaaatcgcaacgaggttcccatccgacgaaccatgaa 298  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36995898 tcgctaatgtgttaagtgcataaaagttcaacattggattgttgtctatgtcagcaaataactcaaatcgcaacgaggttcccatccgacgaaccatgaa 36995997  T
Q  299 agtcctgcattggcatatcaatctttacttatatctttacaattattcactcttcaatatataaaatagaaaattaagaaagttg 383  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36995998 agtcctgcattggcatatcaatctttacttatatctttacaattattcactcttcaatatataaaatagaaaattaagaaagttg 36996082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 149 - 383
Target Start/End: Original strand, 37005790 - 37006024
Alignment:
Q  149 aaaaaacctaccaaaacaatcagttcgcccggggtcaagggggtgaattatcgctaatgtgttaagtgcataaaagttcaacattggagtgttgtctatg 248  Q
    |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||| ||   || ||||||||||||||| ||||| ||||||||       
T  37005790 aaaaaaactaccaaaacaatcagtttgcccggggtcaagtgggtgaattatcgctaatttgcacagagcataaaagttcaaccttggattgttgtctcca 37005889  T
Q  249 tcagcaaataactcaaatcgcaacgaggttcccatccgacgaaccatgaaagtcctgcatt-ggcatatcaatctttacttatatctttacaattattca 347  Q
    ||||||||||||| |||| |||||||||||||| |||||||||| ||||||||||| ||||  | |||| ||||||||||||||||||||||||||||||    
T  37005890 tcagcaaataactgaaattgcaacgaggttcccgtccgacgaactatgaaagtcctacattaagaatataaatctttacttatatctttacaattattca 37005989  T
Q  348 ctcttcaatatataaaatagaaaattaagaaagttg 383  Q
    ||||| ||||||| ||||||||||||||||||||||    
T  37005990 ctcttgaatatat-aaatagaaaattaagaaagttg 37006024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 37005636 - 37005760
Alignment:
Q  1 accctcagcgtcaagaaaacctttttcacaggcacgctcaagatcaaatacatcccccgggtgagccttacaaactaagtgaaatcgatctgaataaact 100  Q
    |||||||| |||||||||| || |||||||||||  | ||||  |||||||||| |||  || | | ||| |||| |||  ||||  |||||||||||||    
T  37005636 accctcagggtcaagaaaatctatttcacaggcagccgcaagcccaaatacatcgcccatgtaatctttagaaacgaagctaaatgcatctgaataaact 37005735  T
Q  101 caaatgaaatggttagtaatagtaa 125  Q
    |||||||||| ||||||| ||||||    
T  37005736 caaatgaaatagttagtattagtaa 37005760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 141; Significance: 8e-74; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 151 - 383
Target Start/End: Complemental strand, 13684366 - 13684134
Alignment:
Q  151 aaaacctaccaaaacaatcagttcgcccggggtcaagggggtgaattatcgctaatgtgttaagtgcataaaagttcaacattggagtgttgtctatgtc 250  Q
    ||||||||||  ||||||||||| ||| |  || | |||||||||||||||||| |||| | ||||||||||| |||||| ||||| |||||||| ||||    
T  13684366 aaaacctacctgaacaatcagttagccggtagttacgggggtgaattatcgctactgtgctcagtgcataaaatttcaaccttggaatgttgtctctgtc 13684267  T
Q  251 agcaaataactcaaatcgcaacgaggttcccatccgacgaaccatgaaagtcctgcattggcatatcaatctttacttatatctttacaattattcactc 350  Q
    |||||||||||||||||| ||||||||||  | || | || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13684266 agcaaataactcaaatcggaacgaggttctgaaccaatgagctatgaaagtcctgcattggcatatcaatctttacttatatctttacaattattcactc 13684167  T
Q  351 ttcaatatataaaatagaaaattaagaaagttg 383  Q
    |||||||||||||||||||||||||||||||||    
T  13684166 ttcaatatataaaatagaaaattaagaaagttg 13684134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 232 - 379
Target Start/End: Original strand, 22192031 - 22192182
Alignment:
Q  232 ttggagtgttgtctatgtcagcaaataactcaaatcgcaacgaggttcccatccgacgaaccatgaaagtcctgcatt----ggcatatcaatctttact 327  Q
    ||||| || ||||| ||||| ||||||||| |||| | |||  ||||||| |||||||||| |||||| |||||||||    ||||||||||||||||||    
T  22192031 ttggaatgctgtctctgtcaacaaataactgaaattggaacctggttcccctccgacgaactatgaaattcctgcattaattggcatatcaatctttact 22192130  T
Q  328 tatatctttacaattattcactcttcaatatataaaatagaaaattaagaaa 379  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  22192131 tatatctttacaattattcactcttgaatatataaaatagaaaattaagaaa 22192182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 13684528 - 13684404
Alignment:
Q  1 accctcagcgtcaagaaaacctttttcacaggcacgctcaagatcaaatacatcccccgggtgagccttacaaactaagtgaaatcgatctgaataaact 100  Q
    ||||||||||| |||||||||||||||| ||||||||||||||| ||||||||  | |||| ||| |||||||||| |||| ||||||||||||||||||    
T  13684528 accctcagcgtgaagaaaacctttttcataggcacgctcaagatgaaatacatatcgcgggcgagtcttacaaactgagtggaatcgatctgaataaact 13684429  T
Q  101 caaatgaaatggttagtaatagtaa 125  Q
    |||||||||| ||||||| ||||||    
T  13684428 caaatgaaatagttagtattagtaa 13684404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 3 - 118
Target Start/End: Original strand, 22191838 - 22191953
Alignment:
Q  3 cctcagcgtcaagaaaacctttttcacaggcacgctcaagatcaaatacatcccccgggtgagccttacaaactaagtgaaatcgatctgaataaactca 102  Q
    |||||||||||||||||||||||||||| ||| ||||||||| |||  ||| |||  |||||  |||||||||| |||| ||||||||||||||||||||    
T  22191838 cctcagcgtcaagaaaacctttttcacaagcatgctcaagatgaaaatcataccctaggtgaatcttacaaactgagtggaatcgatctgaataaactca 22191937  T
Q  103 aatgaaatggttagta 118  Q
     ||||||| |||||||    
T  22191938 gatgaaatagttagta 22191953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 331 - 384
Target Start/End: Original strand, 26648930 - 26648983
Alignment:
Q  331 atctttacaattattcactcttcaatatataaaatagaaaattaagaaagttga 384  Q
    |||||||||||||||||||||| | || |||||||| |||||||||||||||||    
T  26648930 atctttacaattattcactcttgactacataaaataaaaaattaagaaagttga 26648983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 323 - 383
Target Start/End: Original strand, 2749940 - 2750000
Alignment:
Q  323 ttacttatatctttacaattattcactcttcaatatataaaatagaaaattaagaaagttg 383  Q
    |||||||||||||||| | |||||||||||||||  |||||| ||| ||||||||||||||    
T  2749940 ttacttatatctttaccagtattcactcttcaattgataaaacagagaattaagaaagttg 2750000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 244
Target Start/End: Original strand, 26648784 - 26648846
Alignment:
Q  182 gtcaagggggtgaattatcgctaatgtgttaagtgcataaaagttcaacattggagtgttgtc 244  Q
    |||| |||||||||||||||||| |||||| ||| ||||||| ||||||| |||| |||||||    
T  26648784 gtcatgggggtgaattatcgctactgtgttcagtacataaaatttcaacactggattgttgtc 26648846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 101; Significance: 6e-50; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 149 - 383
Target Start/End: Original strand, 8598506 - 8598733
Alignment:
Q  149 aaaaaacctaccaaaacaatcagttcgcccggggtcaagggggtgaattatcgctaatgtgttaagtgcataaaagttcaacattggagtgttgtctatg 248  Q
    ||||||||||||||||||  ||||| || ||| || ||||| ||||||||||||||||||||| ||| ||||||| | |||| ||||| |||||||| ||    
T  8598506 aaaaaacctaccaaaacatacagttagctcggagtgaagggagtgaattatcgctaatgtgttcagtccataaaattccaaccttggaatgttgtctttg 8598605  T
Q  249 tcagcaaataactcaaatcgcaacgaggttcccatccgacgaaccatgaaagtcctgcattggcatatcaatctttacttatatctttacaattattcac 348  Q
    |||||||||||||||||  ||||||||||||  |  |||| |||  |||||||||||||| ||||||||||||||||||||||||||||        |||    
T  8598606 tcagcaaataactcaaaatgcaacgaggttctgaagcgaccaactttgaaagtcctgcataggcatatcaatctttacttatatcttta-------acac 8598698  T
Q  349 tcttcaatatataaaatagaaaattaagaaagttg 383  Q
    |||| ||||||||||||||||||| ||||||||||    
T  8598699 tcttgaatatataaaatagaaaataaagaaagttg 8598733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 2 - 110
Target Start/End: Original strand, 8598207 - 8598315
Alignment:
Q  2 ccctcagcgtcaagaaaacctttttcacaggcacgctcaagatcaaatacatcccccgggtgagccttacaaactaagtgaaatcgatctgaataaactc 101  Q
    |||| ||| ||||||||||| ||||||||||||||||||| |||| |||||| ||||||||||| |||||||||| |||| ||||||||||| |||||||    
T  8598207 cccttagcatcaagaaaaccattttcacaggcacgctcaaaatcatatacataccccgggtgagtcttacaaactgagtggaatcgatctgattaaactc 8598306  T
Q  102 aaatgaaat 110  Q
    |||||||||    
T  8598307 aaatgaaat 8598315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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