View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20596_low_19 (Length: 364)
Name: NF20596_low_19
Description: NF20596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20596_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 14 - 347
Target Start/End: Complemental strand, 48961958 - 48961602
Alignment:
| Q |
14 |
atatatcacaaaccatcatcccattcttaatagacacaagattcatgatctctatctatctttcatagaaaac--taaggtagcatctggttggagttaa |
111 |
Q |
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| T |
48961958 |
atatatcacaaaccatcatcccattcttaatagacacaagattcatgatctctatctatctttcatagaaaacactaaggtagcacctggttggagttaa |
48961859 |
T |
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| Q |
112 |
agtc--------------atgcatccat--atgcatgc--------atttattttccactaatgatgaagtggagagaatcttcaacctttattccccat |
187 |
Q |
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| T |
48961858 |
agtcatgcatccatatgcatgcatgcatgcatgcatgcgtccatacatttattttccactaatga---agtggagagaatcttcaacctttattccccat |
48961762 |
T |
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| Q |
188 |
atacctttataagccagaaacaaacagaaagaaccaactacaatcaattcaaacactatcttcgaatcaaatattgcgaccatcaacatgttccttcaca |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
48961761 |
atacctttataagccagaaacaaacagaaagaaccaactacaatcaattcaaacactatcttcgaatcaaatattgcaaccatcaacattttccttcaca |
48961662 |
T |
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| Q |
288 |
tggtagccttcaccaaatggcttctttgagagagaaagacgcactcctggatcatgatgg |
347 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48961661 |
tggtagccttcaccaaatggcttctttgagagagaaagacgcactcctggatcatgatgg |
48961602 |
T |
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