View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20596_low_23 (Length: 307)
Name: NF20596_low_23
Description: NF20596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20596_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 12958982 - 12958714
Alignment:
| Q |
1 |
tttaaagtgttacttgcaatgccacaacagatgatttaattggaagctctaagtgccacccgatttgcaacttcagtttcgcccgcgaaaacaacaaaac |
100 |
Q |
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| T |
12958982 |
tttaaagtgttacttacaatgccacaatagatgatttgatgggaagctctaagtgccacccgatttgcaactccattttcgcccgcgaaaacaacaaaac |
12958883 |
T |
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| Q |
101 |
ttgtggctcgatggctgacatagcaaagaaatcccaattttatatattaaactttttggctgtgtgtattgactttaaacgatgtgggacttcttcagcc |
200 |
Q |
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| T |
12958882 |
ttgtggcttgatggcttacatagcaaagaaatcccaattttatatattaaactttttggctgtgtgtattgactttaaacgatgtgggactttttcagcc |
12958783 |
T |
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| Q |
201 |
tctaccacattttacaactccaacccctttgtccttctcttt-aagaat-gatcacaccattgcctcac |
267 |
Q |
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| T |
12958782 |
tctaccacattttacaactccaacccctttgtccttctctttaaagaatggatcacaccattgcctcac |
12958714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 98 - 247
Target Start/End: Original strand, 13866813 - 13866960
Alignment:
| Q |
98 |
aacttgtggctcgatggctgacatagcaaagaaatcccaattttatatattaaactttttggctgtgtgtattgactttaaacgatgtgggacttcttca |
197 |
Q |
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| T |
13866813 |
aacttgaggcttgatgccttacaaagtaaagaaaatccaattttatat--tgaactttctggctgtgtgttctgactttaaaggatgtgggacttcttca |
13866910 |
T |
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| Q |
198 |
gcctctaccacattttacaactccaacccctttgtccttctctttaagaa |
247 |
Q |
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| T |
13866911 |
gcctctaccagtttttacaactccaacctctttgtccttctctttaagaa |
13866960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 29 - 179
Target Start/End: Original strand, 13864994 - 13865151
Alignment:
| Q |
29 |
agatgatttaattggaagctctaagtgccacccgatttgcaac------ttcagtttcgcccgcgaaaacaacaaaacttgtggctcgatggct---gac |
119 |
Q |
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| T |
13864994 |
agatgatttgatgggaagctctaaatgccacccaatttacaaccccagtttcactttcacccgtgaaaacaataaaacttgtggcttgatggcttactac |
13865093 |
T |
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| Q |
120 |
atagcaaagaaatcccaattttatatattaaactttttggctgtgtgtattgactttaaa |
179 |
Q |
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| T |
13865094 |
atagcaaagaattcccaattt--tatattaaactttttggctgcgtttattgaatttaaa |
13865151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 249 - 304
Target Start/End: Original strand, 13865154 - 13865209
Alignment:
| Q |
249 |
gatcacaccattgcctcacaatgttatgcttatcttatatttatttcatctcactc |
304 |
Q |
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| T |
13865154 |
gatcaaaccattgcttcacaatgttatgcttatcttatatttatttcatttcactc |
13865209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 196
Target Start/End: Complemental strand, 48708624 - 48708578
Alignment:
| Q |
150 |
aactttttggctgtgtgtattgactttaaacgatgtgggacttcttc |
196 |
Q |
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| T |
48708624 |
aactttctggctgtgtgtattgactttaaacgatgttggacttcttc |
48708578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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