View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20596_low_25 (Length: 273)
Name: NF20596_low_25
Description: NF20596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20596_low_25 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 24 - 273
Target Start/End: Complemental strand, 30167932 - 30167683
Alignment:
| Q |
24 |
ggaaattggagcaacgagagtctgaaaggcagcattaggaaacatgctttgccacgagtttgaaacaagagctctgtctagacgggcttccttggatgct |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30167932 |
ggaaattggagcaacgagagtctgaaaggcagcattaggaaacatgctttgccacgagtttgaaacaagagctctgtctagacgggcttccttggatgct |
30167833 |
T |
|
| Q |
124 |
tcagtaccgatacttttgaaccaagtgaattgatatcccaacagcggcatatccaattctaagttataaatgtattgtttctcttatagtggcccaactt |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30167832 |
tcagtaccgatacttttgaaccaagtgaattgatatcccaacagcggcatatccaattctaagttataaatgtattgtttctcttatagtggcccaactt |
30167733 |
T |
|
| Q |
224 |
cattcttcacactcttttcagtttctttttctcgtgatttatttgcaact |
273 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30167732 |
cattcttcacattcttttcagtttctttttctcgtgatttatttgcaact |
30167683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 25 - 176
Target Start/End: Original strand, 12354085 - 12354236
Alignment:
| Q |
25 |
gaaattggagcaacgagagtctgaaaggcagcattaggaaacatgctttgccacgagtttgaaacaagagctctgtctagacgggcttccttggatgctt |
124 |
Q |
| |
|
|||||||||||||| |||||||||| || ||||| ||||||||| ||||||| ||| || ||||| |||| |||| || |||||||| ||||| | |
|
|
| T |
12354085 |
gaaattggagcaacaagagtctgaagtgctgcatttggaaacatgttttgccatgagggtgtgacaagggctcgatctaagcgcgcttccttagatgcat |
12354184 |
T |
|
| Q |
125 |
cagtaccgatacttttgaaccaagtgaattgatatcccaacagcggcatatc |
176 |
Q |
| |
|
|||||| | ||| || ||||| || ||||| |||||||||||||||||||| |
|
|
| T |
12354185 |
tagtaccaacactcttaaaccatgtaaattggtatcccaacagcggcatatc |
12354236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 25 - 176
Target Start/End: Complemental strand, 23148001 - 23147850
Alignment:
| Q |
25 |
gaaattggagcaacgagagtctgaaaggcagcattaggaaacatgctttgccacgagtttgaaacaagagctctgtctagacgggcttccttggatgctt |
124 |
Q |
| |
|
|||||||||||||| |||||||||| || ||||| ||||||||| ||||||| ||| || ||||| ||||| |||| ||| |||||||| ||||| | |
|
|
| T |
23148001 |
gaaattggagcaacaagagtctgaagtgctgcattcggaaacatgttttgccatgagggtgtgacaagggctctatctaaacgcgcttccttagatgcat |
23147902 |
T |
|
| Q |
125 |
cagtaccgatacttttgaaccaagtgaattgatatcccaacagcggcatatc |
176 |
Q |
| |
|
||||||| | ||| || ||||| || || || |||||||||||||||||||| |
|
|
| T |
23147901 |
cagtaccaacactcttaaaccatgtaaactggtatcccaacagcggcatatc |
23147850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University