View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20596_low_26 (Length: 266)
Name: NF20596_low_26
Description: NF20596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20596_low_26 |
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| [»] scaffold0045 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 11913513 - 11913258
Alignment:
| Q |
1 |
tgtgtctgctatgatgaatcccattttcttgattatcccccatttgtattattatttgaagattataaaatataagacaaaatgtggtttttggaacagt |
100 |
Q |
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| T |
11913513 |
tgtgtctgctattatgaatcccattttgttgattatcccccatttatattattatttgaagattataaaatataagacaaaatgtggtttttggaacagt |
11913414 |
T |
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| Q |
101 |
ttgtgttcatgtgatttcattgtttatatcatttgatttgaggttggtttgtgtgtttaatttgatatcatgcagatgaagttggtttgtttgtttgaaa |
200 |
Q |
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| T |
11913413 |
ttgtcttcatgtgatttcattgtttatatcatttgatttgaggttggtttgtgtgtgtaatttgatatcatgcagatgaagttggtttgtttgtttgaaa |
11913314 |
T |
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| Q |
201 |
caatttgatgtatttgtgaaattaagcatgtagtaagttaaggaaattttgatgat |
256 |
Q |
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| T |
11913313 |
caatttgatgtctttgtgaaattaagcatgtagcaggttaaggaaattttgatgat |
11913258 |
T |
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Target: scaffold0045 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 30 - 121
Target Start/End: Original strand, 19761 - 19852
Alignment:
| Q |
30 |
tgattatcccccatttgtattattatttgaagattataaaatataagacaaaatgtggtttttggaa-cagtttgtgttcatgtgatttcatt |
121 |
Q |
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| T |
19761 |
tgattatcccccatttgtatttttatttgtagattataaaataaatgac-aaatgtggtttatggaagcggtttatgttcatgtgatttcatt |
19852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 38 - 121
Target Start/End: Original strand, 50282 - 50365
Alignment:
| Q |
38 |
ccccatttgtattattatttgaagattataaaatataagacaaaatgtggtttttggaa-cagtttgtgttcatgtgatttcatt |
121 |
Q |
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| T |
50282 |
ccccatttgtatttttatttgtagattataaaataaatgac-aaatgtggtttatggaaccagtttatgttcatgtgatttcatt |
50365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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