View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20596_low_28 (Length: 254)
Name: NF20596_low_28
Description: NF20596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20596_low_28 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
| [»] chr4 (3 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 36 - 254
Target Start/End: Original strand, 36995453 - 36995675
Alignment:
| Q |
36 |
gctcagctcgatacttccttgcaaggagaggtggtaagacattttctctgtgcattaaaaacaatcatacaatgagttgcatggaattcagtgacaccca |
135 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36995453 |
gctcagctcaatacttccttacaaggagaggtgggaagacattttctctgtgcattaaaaacaatcatacaatgagttgcatggaattcagtgacaccca |
36995552 |
T |
|
| Q |
136 |
atg----ttattggtcaatatacttagtaacaaggttaaaaatttatgagtatattgaccaacaacagtagaatgagattgagatttctaatgcatacat |
231 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36995553 |
atgcctgttattggtcaatatacttagtaacaaggtaaaaaatttatgagtatattgaccaacaacagtagaatgagattgagatttctaatgcatacat |
36995652 |
T |
|
| Q |
232 |
accgacttaccccaacacctgaa |
254 |
Q |
| |
|
| ||||||||||||||||||||| |
|
|
| T |
36995653 |
aacgacttaccccaacacctgaa |
36995675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 43 - 207
Target Start/End: Original strand, 37005404 - 37005572
Alignment:
| Q |
43 |
tcgatacttccttgcaaggagaggtggtaagacattttctctgtgcattaaaaacaatcatacaatgagttgcatggaattcagtgacacccaatg---- |
138 |
Q |
| |
|
|||| |||||||| |||||| ||| || || || ||||| |||||||||||||||||||| ||||||||||||||| ||| |||||||||| ||| |
|
|
| T |
37005404 |
tcgaaacttcctttcaaggaaaggcgggaaaactttttcactgtgcattaaaaacaatcacacaatgagttgcatgtaatgcagtgacacctgatgccta |
37005503 |
T |
|
| Q |
139 |
ttattggtcaatatacttagtaacaaggttaaaaatttatgagtatattgaccaacaacagtagaatga |
207 |
Q |
| |
|
|||||| | |||||||||||||| | |||||||| | ||||||||| |||||||| || | |||||||| |
|
|
| T |
37005504 |
ttattgataaatatacttagtaatatggttaaaattctatgagtatgttgaccaataaaaatagaatga |
37005572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 36 - 254
Target Start/End: Complemental strand, 13684773 - 13684551
Alignment:
| Q |
36 |
gctcagctcgatacttccttgcaaggagaggtggtaagacattttctctgtgcattaaaaacaatcatacaatgagttgcatggaattcagtgacaccca |
135 |
Q |
| |
|
|||||| |||||||||| || |||||||||| || |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13684773 |
gctcagttcgatacttctttacaaggagaggcgggaagaaattttctctgcgcattaaaaacaatcatacaatgagttgcatggaattcagtgacaccca |
13684674 |
T |
|
| Q |
136 |
atg----ttattggtcaatatacttagtaacaaggttaaaaatttatgagtatattgaccaacaacagtagaatgagattgagatttctaatgcatacat |
231 |
Q |
| |
|
||| ||||||||||||||||| ||||| | ||| |||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
13684673 |
atgcttgttattggtcaatatactcagtaatacggtaaaaattctatgagtatattgaccaacaatagtagaatgagattgagatttctaatgcatacat |
13684574 |
T |
|
| Q |
232 |
accgacttaccccaacacctgaa |
254 |
Q |
| |
|
| |||||||||| |||| ||||| |
|
|
| T |
13684573 |
aacgacttacccaaacatctgaa |
13684551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 36 - 248
Target Start/End: Original strand, 22191591 - 22191807
Alignment:
| Q |
36 |
gctcagctcgatacttccttgcaaggagaggtggtaagacattttctctgtgcattaaaaacaatcatacaatgagttgcatggaattcagtgacaccca |
135 |
Q |
| |
|
|||||| | ||||| || || ||| |||||| || |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
22191591 |
gctcagtttgatacctctttacaaagagaggcgggaagatattttctctgtgcattaacaacaatcatacaatgagttgcatggaattcagtgacaccga |
22191690 |
T |
|
| Q |
136 |
atg----ttattggtcaatatacttagtaacaaggttaaaaatttatgagtatattgaccaacaacagtagaatgagattgagatttctaatgcatacat |
231 |
Q |
| |
|
||| ||||||||||||||||||||||| | || |||| | |||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
22191691 |
atgcatgttattggtcaatatacttagtaatattgtaaaaattctatgagtatattgaccaacaacagtaaaatgagattgagatttcttatgcatacat |
22191790 |
T |
|
| Q |
232 |
accgacttaccccaaca |
248 |
Q |
| |
|
| |||||||||| |||| |
|
|
| T |
22191791 |
aacgacttacccaaaca |
22191807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 36 - 138
Target Start/End: Original strand, 26648384 - 26648486
Alignment:
| Q |
36 |
gctcagctcgatacttccttgcaaggagaggtggtaagacattttctctgtgcattaaaaacaatcatacaatgagttgcatggaattcagtgacaccca |
135 |
Q |
| |
|
||||||||||||||||| || |||||||||| | |||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26648384 |
gctcagctcgatacttctttacaaggagaggctggaagaaattttctctgtgcattaataacgatcatacaatgagttgcatggaattcagtgacaccca |
26648483 |
T |
|
| Q |
136 |
atg |
138 |
Q |
| |
|
||| |
|
|
| T |
26648484 |
atg |
26648486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 61 - 254
Target Start/End: Original strand, 8597983 - 8598183
Alignment:
| Q |
61 |
gagaggtggtaagacattttctctgtgcattaaaaacaatcatacaatgagttgcatggaattcagtgacacccaatg----ttattggtcaatatactt |
156 |
Q |
| |
|
|||||| || ||||||||| |||||||||| | ||||||||||||||||||||||||||||||| || |||||| || |||||||||||||||||| |
|
|
| T |
8597983 |
gagaggcgggaagacatttagtctgtgcatttagaacaatcatacaatgagttgcatggaattcaatggcacccattgactgttattggtcaatatactt |
8598082 |
T |
|
| Q |
157 |
agtaacaaggttaaaaatttatgagtatatt---gaccaacaacagtagaatgagattgagatttctaatgcatacataccgacttaccccaacacctga |
253 |
Q |
| |
|
||||| | ||| |||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||| |||| |
|
|
| T |
8598083 |
agtaatatggtaaaaattatatgagtatattattgaccaacaacagtagaatgagattgagatttctaatgcataaataacgacttacccaaacatctga |
8598182 |
T |
|
| Q |
254 |
a |
254 |
Q |
| |
|
| |
|
|
| T |
8598183 |
a |
8598183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University