View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20596_low_3 (Length: 658)
Name: NF20596_low_3
Description: NF20596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20596_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 580; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 8 - 643
Target Start/End: Complemental strand, 36420805 - 36420168
Alignment:
| Q |
8 |
cagaccttttttaaaatttcaacacttcttaaagcagcatcactatgggtaggaacaatgctggtgtcttttggtactgttaccaacatctcagcattca |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36420805 |
cagaccttttttaaaatttcaacacttcttaa-gcagcatcactatgggtaggaacaatgctggtgtcttttggtactgttaccaacatctcagcattca |
36420707 |
T |
|
| Q |
108 |
tatccatcaaattactagtgtgaacacttctatcaggacacaaatttaagacttgactatctagacaaatagatgaattctccactaggtggaaagctag |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36420706 |
tatccatcaaattactagtgtgaacacttctatcaggacacaaatttaagacttgactatctagacaaatagatgaattctccactaggtggaaagctag |
36420607 |
T |
|
| Q |
208 |
cttcttctctaaagtagtatcagtttcttcatcaataaggtcaccc-aagactttggcagaatggccacactgttctgagctgctgcagatgaagcagct |
306 |
Q |
| |
|
|| ||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36420606 |
ctccttctctaaggtagtatcagtttcttcatcaataaggtctccccaagactttggcagaatggccacactgttctgagctgctgcagatgaagcagct |
36420507 |
T |
|
| Q |
307 |
gcagcttccaatctagaattcacaggtttcaagacaggaaaaacaggaagcttgtcacatgtcagagagatgtaattggtagtgataggctgaggcattg |
406 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36420506 |
gcagcttccaatctagaattcacaggtttcaagacaggaaaaacaggaagcttgtcacatgtcagagagatgtaattggtagtgataggctgaggcattg |
36420407 |
T |
|
| Q |
407 |
gtttctgcaga--ctccatagttaaatcagcaatagaggtacctatgaccatgttctctgaatagctagttaacttggggcttacaaccaaagattgaat |
504 |
Q |
| |
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||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36420406 |
gttgctgcagagactccatagttaaatcagcaatagaggtacctatgaccatgttctctgaatagctagttaacttggggcttacaaccaaagattgaat |
36420307 |
T |
|
| Q |
505 |
agcagctttattcacattggtggagtcaaagccactattcagttcctcaaccaaagcctcccgatccgaagtgttattcaaatcattcaaaaggtcaaaa |
604 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
36420306 |
agcagctttattcacattggtgaagtcaaagccactattcagttcctcaaccatagcctcccgatccgaagtgttattcaaataattcaaaaggtcaaaa |
36420207 |
T |
|
| Q |
605 |
gagtttgtcaaaggtacattattcaaaaatgctgatggt |
643 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||| |
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| T |
36420206 |
gagtttgtcaaaggtacagtattcaaaaatgctgatggt |
36420168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 15 - 123
Target Start/End: Complemental strand, 45348404 - 45348296
Alignment:
| Q |
15 |
tttttaaaatttcaacacttcttaaagcagcatcactatgggtaggaacaatgctggtgtcttttggtactgttaccaacatctcagcattcatatccat |
114 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| | |||| |||| ||||||||||||||| |||||||||||||||||||||| ||||| | |
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| T |
45348404 |
tttttaaaatttcaacacttcttaaagcagcatcactatagataggtgcaattttggtgtcttttggtattgttaccaacatctcagcattcctatcctt |
45348305 |
T |
|
| Q |
115 |
caaattact |
123 |
Q |
| |
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|| |||||| |
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|
| T |
45348304 |
cagattact |
45348296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 15 - 123
Target Start/End: Complemental strand, 45357883 - 45357775
Alignment:
| Q |
15 |
tttttaaaatttcaacacttcttaaagcagcatcactatgggtaggaacaatgctggtgtcttttggtactgttaccaacatctcagcattcatatccat |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | |||| |||| ||||||||||||||| |||||||||||||||||||||| ||||| | |
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|
| T |
45357883 |
tttttaaaatttcaacacttcttaaagcagcatcactatagataggtgcaattttggtgtcttttggtattgttaccaacatctcagcattcctatcctt |
45357784 |
T |
|
| Q |
115 |
caaattact |
123 |
Q |
| |
|
|| |||||| |
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|
| T |
45357783 |
cagattact |
45357775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 319
Target Start/End: Complemental strand, 45348275 - 45348126
Alignment:
| Q |
171 |
gacaaatagatgaattctccactaggtggaaagctagcttcttctctaaagtagtatcagtttcttcatcaataaggtcacc-caagactttggcagaat |
269 |
Q |
| |
|
||||||| ||||| ||||||| | ||||||||| || | |||||||| | | |||||| ||||||||| |||||| || ||||||||||||||||| |
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| T |
45348275 |
gacaaatggatgagttctccattgggtggaaagtgagatcattctctaaggaattatcagattcttcatccgcaaggtctccgcaagactttggcagaat |
45348176 |
T |
|
| Q |
270 |
ggccacactgttctgagctgctgcagatgaagcagctgcagcttccaatc |
319 |
Q |
| |
|
| ||||||||||| ||||||| ||| | |||| | |||||| |||||||| |
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| T |
45348175 |
gcccacactgttcagagctgcagcataagaagtaactgcagtttccaatc |
45348126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 319
Target Start/End: Complemental strand, 45357754 - 45357605
Alignment:
| Q |
171 |
gacaaatagatgaattctccactaggtggaaagctagcttcttctctaaagtagtatcagtttcttcatcaataaggtcacc-caagactttggcagaat |
269 |
Q |
| |
|
||||||| ||||| ||||||| | ||||||||| || | |||||||| | | |||||| ||||||||| |||||| || ||||||||||||||||| |
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| T |
45357754 |
gacaaatggatgagttctccattgggtggaaagtgagatcattctctaaggaattatcagattcttcatccgcaaggtctccgcaagactttggcagaat |
45357655 |
T |
|
| Q |
270 |
ggccacactgttctgagctgctgcagatgaagcagctgcagcttccaatc |
319 |
Q |
| |
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| ||||||||||| ||||||| ||| | |||| | |||||| |||||||| |
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| T |
45357654 |
gcccacactgttcagagctgcagcataagaagtaactgcagtttccaatc |
45357605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 15 - 147
Target Start/End: Original strand, 45119605 - 45119737
Alignment:
| Q |
15 |
tttttaaaatttcaacacttcttaaagcagcatcactatgggtaggaacaatgctggtgtcttttggtactgttaccaacatctcagcattcatatccat |
114 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| | |||| |||| ||||||||||||||| |||||||||||||||||||||| ||||| | |
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|
| T |
45119605 |
tttttaaaattgcaacacttcttaaagcagcatcactatagataggtgcaattttggtgtcttttggtattgttaccaacatctcagcattcctatcctt |
45119704 |
T |
|
| Q |
115 |
caaattactagtgtgaacacttctatcaggaca |
147 |
Q |
| |
|
|| ||||||| ||||||| || || ||||||| |
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|
| T |
45119705 |
cagattactatggtgaacatttttaacaggaca |
45119737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 212 - 395
Target Start/End: Original strand, 45119774 - 45119958
Alignment:
| Q |
212 |
ttctctaaagtagtatcagtttcttcatcaataaggtcaccc-aagactttggcagaatggccacactgttctgagctgctgcagatgaagcagctgcag |
310 |
Q |
| |
|
|||||||| | | |||||| |||||||||| |||||| ||| ||||||||||||||||| ||||||||||| || |||| ||| | |||| | ||||| |
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| T |
45119774 |
ttctctaaggaattatcagattcttcatcagcaaggtctccccaagactttggcagaatgcccacactgttcagaactgcagcataagaagtaattgcag |
45119873 |
T |
|
| Q |
311 |
cttccaatctagaattcacaggtttcaagacaggaaaaacaggaagcttgtcacatgtcagagagatgtaattggtagtgatagg |
395 |
Q |
| |
|
|||||||| | |||||||||| ||||||||||||||||||| || |||| ||| |||||||| | ||||||||||||||| |
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|
| T |
45119874 |
tttccaatccaattttcacaggttctaagacaggaaaaacaggaaatttatcacttgttagagagatatgattggtagtgatagg |
45119958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 7e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 226 - 403
Target Start/End: Complemental strand, 15340242 - 15340064
Alignment:
| Q |
226 |
atcagtttcttcatcaataaggtcaccc-aagactttggcagaatggccacactgttctgagctgctgcagatgaagcagctgcagcttccaatctagaa |
324 |
Q |
| |
|
|||| ||||||||||| |||||| ||| || ||||||||| | ||||||| ||||||||||||| |||||||| | ||| || |||||||| || | |
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|
| T |
15340242 |
atcaatttcttcatcagcaaggtctccccaaaactttggcatcaaggccacattgttctgagctgcattagatgaagaaactgtagtttccaatccagta |
15340143 |
T |
|
| Q |
325 |
ttcacaggtttcaagacaggaaaaacaggaagcttgtcacatgtcagagagatgtaattggtagtgataggctgaggca |
403 |
Q |
| |
|
||| || ||| ||||||||||||||||||||||| |||| ||||||||| ||| || | ||||||||||||| |||| |
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|
| T |
15340142 |
ttcgcaagttctaagacaggaaaaacaggaagcttatcacgtgtcagagaagtgtgatagatagtgataggctggggca |
15340064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 15340356 - 15340292
Alignment:
| Q |
15 |
tttttaaaatttcaacacttcttaaagcagcatcactatgggtaggaacaatgctggtgtctttt |
79 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||||| |||||||||||||| |||||||| |
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|
| T |
15340356 |
tttttaaaatttcaacacttcttaaagcaacctcactatgtataggaacaatgctgatgtctttt |
15340292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 14302287 - 14302348
Alignment:
| Q |
18 |
ttaaaatttcaacacttcttaaagcagcatcactatgggtaggaacaatgctggtgtctttt |
79 |
Q |
| |
|
|||||||| ||||||||||||| | ||||||||||||| |||| ||||| ||| ||||||| |
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|
| T |
14302287 |
ttaaaattgcaacacttcttaatgtagcatcactatggacaggagcaatgttggagtctttt |
14302348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 13482019 - 13482056
Alignment:
| Q |
15 |
tttttaaaatttcaacacttcttaaagcagcatcacta |
52 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
13482019 |
tttttaagatttctacacttcttaaagcagcatcacta |
13482056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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