View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20596_low_4 (Length: 650)

Name: NF20596_low_4
Description: NF20596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20596_low_4
NF20596_low_4
[»] chr1 (1 HSPs)
chr1 (1-633)||(49450021-49450653)


Alignment Details
Target: chr1 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 1 - 633
Target Start/End: Complemental strand, 49450653 - 49450021
Alignment:
Q  1 gtgtcggtgtcgaacatcggacataccattaatctgataagtgtcggtgttacattgatgatgagtgatggttagtatgatagtgttgtggaatattatt 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49450653 gtgtcggtgtcgaacatcggacataccgttaatctgataagtgtcggtgttacattgatgatgagtgatggttagtatgatagtgttgtggaatattatt 49450554  T
Q  101 ttatttannnnnnngaaaaatacaaagttgttaatcacgtgtgcagattaaaaagttttgtaaacaatgggaggtctcccattgaattggagctatagga 200  Q
    |||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  49450553 ttatttatttttttgaaaaatacaaagttgttaatcacgtgtgcagattaaaaagttttgtaaacaatgggaggtttcccattgaattggagctatagga 49450454  T
Q  201 gttggatgagcttttggatcacnnnnnnnnnnnnnnnnnnnctcagataactgttcaaaacggtcttaatacttgttgttctggtttcacaagcatgtgc 300  Q
    ||||||||||||||||||||||                   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49450453 gttggatgagcttttggatcactttttccttttttggttttctcagataactgttcaaaacggtcttaatacttgttgttctggtttcacaagcatgtgc 49450354  T
Q  301 aactgtatttgttgtaaagnnnnnnnnnnnnnnnnnnctgcttttacattctattaactccacttctcatggatgagttttgttttttaatttatataaa 400  Q
    |||||||||||||||||||                  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49450353 aactgtatttgttgtaaagttttttttgtctttttttctgcttttacattctattaactccacttctcatggatgagttttgttttttaatttatataaa 49450254  T
Q  401 cctacacaggacaacttcatatgtaagatgagttttctcctgatgcaaatggcctctacaatgtgagcttttataaatttcagatcnnnnnnncatgttt 500  Q
    ||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||    
T  49450253 cctacacaggacaacttcatatgcaagatgatatttctcctgatgcaaatggcctctacaatgtgagcttttataaatttcagatctttttttcatgttt 49450154  T
Q  501 gaagtttacaactaaaggaaatggagaaaatttgtgaattctgcacagcattgaggccacttgtttactgtaatgctgatgcagcatacctttgtctatc 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49450153 gaagtttacaactaaaggaaatggagaaaatttgtgaattctgcacagcattgaggccacttgtttactgtaatgctgatgcagcatacctttgtctatc 49450054  T
Q  601 ctgtgatgcaaaggtccattgggcaaatgaatt 633  Q
    |||||||||||||||||||||||||||||||||    
T  49450053 ctgtgatgcaaaggtccattgggcaaatgaatt 49450021  T

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