View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20596_low_7 (Length: 545)

Name: NF20596_low_7
Description: NF20596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20596_low_7
NF20596_low_7
[»] chr8 (4 HSPs)
chr8 (18-540)||(16463909-16464431)
chr8 (374-509)||(16494174-16494309)
chr8 (297-333)||(24294585-24294621)
chr8 (304-333)||(5228237-5228266)
[»] chr3 (4 HSPs)
chr3 (299-333)||(42252186-42252220)
chr3 (295-333)||(20882078-20882116)
chr3 (300-333)||(9276948-9276981)
chr3 (305-333)||(26643225-26643253)
[»] chr7 (1 HSPs)
chr7 (296-333)||(5363411-5363448)
[»] chr1 (2 HSPs)
chr1 (299-333)||(303754-303788)
chr1 (294-334)||(47525024-47525064)
[»] scaffold0091 (1 HSPs)
scaffold0091 (304-333)||(7654-7683)
[»] chr6 (1 HSPs)
chr6 (247-288)||(3151392-3151433)
[»] chr5 (1 HSPs)
chr5 (304-333)||(33267922-33267951)
[»] chr2 (2 HSPs)
chr2 (305-334)||(19173878-19173907)
chr2 (239-288)||(22131264-22131313)
[»] scaffold0393 (1 HSPs)
scaffold0393 (299-331)||(12174-12206)


Alignment Details
Target: chr8 (Bit Score: 479; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 18 - 540
Target Start/End: Original strand, 16463909 - 16464431
Alignment:
Q  18 actcatagactaaaacctttttctaatcttttaatatatcaccgacacttattaaaggcatgtatgtgccgtccagacagcaacacatgtggttatatgc 117  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16463909 actcatagactaaaacctttttctaatcttttaatatatcgccgacacttattaaaggcatgtatgtgccgtccagacagcaacacatgtggttatatgc 16464008  T
Q  118 aatgacttatattcccctaaattatcaccagtgacagtgccatagtcatgtctagtgtttatgcttctattagtgcttcatatacaagggagaaagagga 217  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  16464009 aatgacttatattcccctaaattatcaccggtgacagtgtcatagtcatgtctaatgtttatgcttctattagtgcttcatatacaagggagaaagagga 16464108  T
Q  218 taaataaagcactaacactttgacactaatagtaatttgagaatatgaaattgttgaatgtaaacacatgtttccgcgtcagacatgccttcaatctgaa 317  Q
    |||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  16464109 taaataaagcaccaacactttgacaccaatagtaatttgagaaaatgaaattgttgaatgtaaacacatgtttccgcgtcagacatgccatcagtctgaa 16464208  T
Q  318 gtgtcggtgctacataatagaggattgatacttatgttgttttgttctttcattttttcagctacaacgtacaataacatgaggaagccagtgacaaata 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16464209 gtgtcggtgctacataatagaggattgatacttatgttgttttgttctttcattttttcagctacaacgtacaataacatgaggaagccagtgacaaata 16464308  T
Q  418 gctcaaactacatttccaacccacatgaaatgggagttggggaaattaatccactcaaagctctcaaccctggtttagtctttgaaacaaatgtgaaaga 517  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16464309 gctcgaactacatttccaacccacatgaaatgggagttggggaaattaatccactcaaagctctcaaccctggtttagtctttgaaacaaatgtgaaaga 16464408  T
Q  518 ctacattaacttcctatgctact 540  Q
    |||||||||||||||||| ||||    
T  16464409 ctacattaacttcctatgttact 16464431  T

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Target: chr8; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 374 - 509
Target Start/End: Original strand, 16494174 - 16494309
Alignment:
Q  374 ttcagctacaacgtacaataacatgaggaagccagtgacaaatagctcaaactacatttccaacccacatgaaatgggagttggggaaattaatccactc 473  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||||| ||| || ||||||||||||||||||||||||| |||||||||||||||    
T  16494174 ttcagctacaacctacaataacatgaggaagccagtgaccaatagctcaaattactttgccaacccacatgaaatgggagttggagaaattaatccactc 16494273  T
Q  474 aaagctctcaaccctggtttagtctttgaaacaaat 509  Q
    ||||||||||||||||| ||||||||||||||||||    
T  16494274 aaagctctcaaccctggattagtctttgaaacaaat 16494309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 297 - 333
Target Start/End: Original strand, 24294585 - 24294621
Alignment:
Q  297 cagacatgccttcaatctgaagtgtcggtgctacata 333  Q
    |||||||||||||||| ||||||||||||||||||||    
T  24294585 cagacatgccttcaatatgaagtgtcggtgctacata 24294621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 333
Target Start/End: Original strand, 5228237 - 5228266
Alignment:
Q  304 gccttcaatctgaagtgtcggtgctacata 333  Q
    ||||||||||||||||||||||||||||||    
T  5228237 gccttcaatctgaagtgtcggtgctacata 5228266  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 299 - 333
Target Start/End: Complemental strand, 42252220 - 42252186
Alignment:
Q  299 gacatgccttcaatctgaagtgtcggtgctacata 333  Q
    |||||||||||||||||||||||||||||||||||    
T  42252220 gacatgccttcaatctgaagtgtcggtgctacata 42252186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 295 - 333
Target Start/End: Original strand, 20882078 - 20882116
Alignment:
Q  295 gtcagacatgccttcaatctgaagtgtcggtgctacata 333  Q
    ||||||||||||||||||||||||| ||||| |||||||    
T  20882078 gtcagacatgccttcaatctgaagtatcggtcctacata 20882116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 333
Target Start/End: Original strand, 9276948 - 9276981
Alignment:
Q  300 acatgccttcaatctgaagtgtcggtgctacata 333  Q
    ||||||||||||||||||||||| ||||||||||    
T  9276948 acatgccttcaatctgaagtgtcagtgctacata 9276981  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 305 - 333
Target Start/End: Complemental strand, 26643253 - 26643225
Alignment:
Q  305 ccttcaatctgaagtgtcggtgctacata 333  Q
    |||||||||||||||||||||||||||||    
T  26643253 ccttcaatctgaagtgtcggtgctacata 26643225  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 296 - 333
Target Start/End: Original strand, 5363411 - 5363448
Alignment:
Q  296 tcagacatgccttcaatctgaagtgtcggtgctacata 333  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  5363411 tcagacatgccttcaatttgaagtgtcggtgctacata 5363448  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 299 - 333
Target Start/End: Original strand, 303754 - 303788
Alignment:
Q  299 gacatgccttcaatctgaagtgtcggtgctacata 333  Q
    ||||||||||||||||||||||| |||||||||||    
T  303754 gacatgccttcaatctgaagtgttggtgctacata 303788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 294 - 334
Target Start/End: Complemental strand, 47525064 - 47525024
Alignment:
Q  294 cgtcagacatgccttcaatctgaagtgtcggtgctacataa 334  Q
    |||||||||||||||||||  ||||||||| ||||||||||    
T  47525064 cgtcagacatgccttcaattagaagtgtcgttgctacataa 47525024  T

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Target: scaffold0091 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 333
Target Start/End: Original strand, 7654 - 7683
Alignment:
Q  304 gccttcaatctgaagtgtcggtgctacata 333  Q
    ||||||||||||||||||||||||||||||    
T  7654 gccttcaatctgaagtgtcggtgctacata 7683  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 288
Target Start/End: Complemental strand, 3151433 - 3151392
Alignment:
Q  247 tagtaatttgagaatatgaaattgttgaatgtaaacacatgt 288  Q
    |||||||||||||| ||| ||||||||||||||| |||||||    
T  3151433 tagtaatttgagaaaatggaattgttgaatgtaatcacatgt 3151392  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 333
Target Start/End: Original strand, 33267922 - 33267951
Alignment:
Q  304 gccttcaatctgaagtgtcggtgctacata 333  Q
    ||||||||||||||||||||||||||||||    
T  33267922 gccttcaatctgaagtgtcggtgctacata 33267951  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 334
Target Start/End: Original strand, 19173878 - 19173907
Alignment:
Q  305 ccttcaatctgaagtgtcggtgctacataa 334  Q
    ||||||||||||||||||||||||||||||    
T  19173878 ccttcaatctgaagtgtcggtgctacataa 19173907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 22131313 - 22131264
Alignment:
Q  239 gacactaatagtaatttgagaatatgaaattgttgaatgtaaacacatgt 288  Q
    |||||| ||||||||||||||| |||| |||||| ||||||| |||||||    
T  22131313 gacactgatagtaatttgagaaaatgacattgttcaatgtaatcacatgt 22131264  T

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Target: scaffold0393 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 299 - 331
Target Start/End: Complemental strand, 12206 - 12174
Alignment:
Q  299 gacatgccttcaatctgaagtgtcggtgctaca 331  Q
    |||||||||||||||| ||||||||||||||||    
T  12206 gacatgccttcaatctaaagtgtcggtgctaca 12174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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