View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20597_high_1 (Length: 425)
Name: NF20597_high_1
Description: NF20597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20597_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 13 - 380
Target Start/End: Original strand, 42640476 - 42640842
Alignment:
| Q |
13 |
aatatccaattcggtgttgacaaaaattacacttagagcttctaaaaaatcagggtgtcaacgtgatattgtcaaactcatagccagtccaaacatatat |
112 |
Q |
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| T |
42640476 |
aatatccaattcgattttgataaaaattacacttagagcttctaaaaaaccacagtatcaacgtgatattgtcaaactcatagtctgtccaaacatatat |
42640575 |
T |
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| Q |
113 |
tatctgttacggatacaagtacaattaagtgattcaagttgatcggttggaattaataatgtcttaaatgttttgatttatttattggtagaaacccctg |
212 |
Q |
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| T |
42640576 |
gatctgttacggatacaagtacaattaagtgattcaagttgatcggttggaattattaatgtcttgaatgttttgatt-atttattggtagaaacccctg |
42640674 |
T |
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| Q |
213 |
aaaataaattgtgacaagggtaacttaggtgtccttacaaatcaatttgcggaggtcaaaatctctgtaaattagtttagtcaatgcaaacatatactat |
312 |
Q |
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| T |
42640675 |
aaaataaattgtgacaagggtaacttaggtgtccttacgaatcaatttgtggaggtcaaaatctctgtaaattagtttagtcaatgcaaacatatactat |
42640774 |
T |
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| Q |
313 |
gtatgtgttgcgaatacaagtagtggattcgactggaattgataatgattacgtagctatttatgttt |
380 |
Q |
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| T |
42640775 |
gtatgtgttgcgaatacaagtagtggaatcgactggaattgataatgattacgtagctatttatgttt |
42640842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 378 - 425
Target Start/End: Original strand, 42641017 - 42641064
Alignment:
| Q |
378 |
ttttggccaaacgttttaagttatttcttactagaaactcacgcaaat |
425 |
Q |
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| T |
42641017 |
ttttggacaaacgttttaatttatttcttactagaaactcccgcaaat |
42641064 |
T |
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