View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20597_high_3 (Length: 267)
Name: NF20597_high_3
Description: NF20597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20597_high_3 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 18 - 267
Target Start/End: Complemental strand, 42641342 - 42641098
Alignment:
| Q |
18 |
ataaatatgtagg-gggaaaaaatacccc-tctctataggttcaattggaccacaattagtcttctttgttttctttgggatatgaaataaatcatattt |
115 |
Q |
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| T |
42641342 |
ataaatatgtaggtgggaaaaaataccccctctctataggttcaattggaccacaattagtcttctatg-----tttgggatatgaaataaatcatattt |
42641248 |
T |
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| Q |
116 |
ttaaaccacaaatctataacatgaatatactaaccacgaccttaaatttgtaaatttattttcaatcattattgataaaataaatatttgcaagaattac |
215 |
Q |
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| T |
42641247 |
ttaaaccacaaatctataacatgaatatactaaccacgaccttaaatttgtaaatttattttcaatcattattgataaaataaatatttgcaagaattac |
42641148 |
T |
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| Q |
216 |
gagacattacnnnnnnnncacgttatttagagagctgagtacaaattggttt |
267 |
Q |
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| T |
42641147 |
gagacattac--aaaaaacaagttatttagagagctgagtacaaattggttt |
42641098 |
T |
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