View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20597_high_4 (Length: 251)
Name: NF20597_high_4
Description: NF20597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20597_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 31858985 - 31859226
Alignment:
| Q |
1 |
cattttttcaagcattatggttgccaccctttgaattactgctgtatcttctgcaagcaatatcctcaaaccttcaagagacttctttccattcatagct |
100 |
Q |
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| T |
31858985 |
cattttttcaagcattatggttgccaccctttgaattactgctgtatcttctgcaagcaatatcctcaaaccttcaagagacttctttccattcatagct |
31859084 |
T |
|
| Q |
101 |
ttacttgaaccactaaccctacttgtttcactacctttagaatcttcaccttttgctcttgttgaaataaatgcttctttatgttccatgtatccattac |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31859085 |
ttacttgaaccactaaccctacttgtttcaccacctttagaatcttcaccttttgctcttgttgaaataaatgcttctttatgttccatgtatccattac |
31859184 |
T |
|
| Q |
201 |
ttaatcctaataagcagttacttttctggtatagtgatgatg |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
31859185 |
ttaatcctaataagcagttacttttctggtatagtgatgatg |
31859226 |
T |
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Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 8870274 - 8870188
Alignment:
| Q |
1 |
cattttttcaagcattatggttgccaccctttgaattactgctgtatcttctgcaagcaatatcctcaaaccttcaagagacttctt |
87 |
Q |
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|||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||| ||||| || || ||||| || ||||| |
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| T |
8870274 |
cattttttcaagcattattgttgcaaccctttgaattactggtgtatcttctgcaagcaaaatccttaacccctcaagtgatttctt |
8870188 |
T |
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