View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20597_high_6 (Length: 201)
Name: NF20597_high_6
Description: NF20597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20597_high_6 |
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| [»] scaffold0286 (1 HSPs) |
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Alignment Details
Target: scaffold0286 (Bit Score: 161; Significance: 4e-86; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 161; E-Value: 4e-86
Query Start/End: Original strand, 13 - 185
Target Start/End: Original strand, 12372 - 12543
Alignment:
| Q |
13 |
attatactgcaactcattgacttcctcatgtagaagcatgctacttactcaggttttgtattataactatctgacttcatatttgatatttcataatgat |
112 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
12372 |
attacactgcaactcattgacttcctcatgtagaagcatgctacttactcaggttttgtat-ataactatctgacttcatatttgatatttcataatgat |
12470 |
T |
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| Q |
113 |
tttacttgctaaacttgtgagttatttacaaataacaggatgtgcatgaagatggaggcaccgagtttagttt |
185 |
Q |
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| T |
12471 |
tttacttgctaaacttgtgagttatttacaaataacaggatgtgcatgaagatggaggcaccgagtttagttt |
12543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 161; Significance: 4e-86; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 4e-86
Query Start/End: Original strand, 13 - 185
Target Start/End: Complemental strand, 2170889 - 2170718
Alignment:
| Q |
13 |
attatactgcaactcattgacttcctcatgtagaagcatgctacttactcaggttttgtattataactatctgacttcatatttgatatttcataatgat |
112 |
Q |
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| T |
2170889 |
attacactgcaactcattgacttcctcatgtagaagcatgctacttactcaggttttgtat-ataactatctgacttcatatttgatatttcataatgat |
2170791 |
T |
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| Q |
113 |
tttacttgctaaacttgtgagttatttacaaataacaggatgtgcatgaagatggaggcaccgagtttagttt |
185 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2170790 |
tttacttgctaaacttgtgagttatttacaaataacaggatgtgcatgaagatggaggcaccgagtttagttt |
2170718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 4e-49
Query Start/End: Original strand, 20 - 185
Target Start/End: Original strand, 2187736 - 2187908
Alignment:
| Q |
20 |
tgcaactcattgacttcctcatgtagaagcatgctacttactcaggttttgtatt-------ataactatctgacttcatatttgatatttcataatgat |
112 |
Q |
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||||| ||| |||||||||||||||||||||||||||||| |||||||||||||| ||| |||| ||||||||| ||| ||||||||||||||| |
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| T |
2187736 |
tgcaattcactgacttcctcatgtagaagcatgctacttagtcaggttttgtattttgttttatatctatttgacttcatttttaatatttcataatgat |
2187835 |
T |
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| Q |
113 |
tttacttgctaaacttgtgagttatttacaaataacaggatgtgcatgaagatggaggcaccgagtttagttt |
185 |
Q |
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||| |||||||||||||| |||| |||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
2187836 |
ttttcttgctaaacttgttagttctttacaaataacagcatttgcatgaagatggaggcaccgagtttagttt |
2187908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 28191279 - 28191337
Alignment:
| Q |
18 |
actgcaactcattgacttcctcatgtagaagcatgctacttactcaggttttgtattat |
76 |
Q |
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||||||| |||||||||||||| ||||||| ||||||| | | ||||||||||| |||| |
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| T |
28191279 |
actgcaaatcattgacttcctcgtgtagaaacatgctattgaatcaggttttgttttat |
28191337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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