View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20597_low_1 (Length: 524)
Name: NF20597_low_1
Description: NF20597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20597_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 451; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 1 - 502
Target Start/End: Complemental strand, 17377824 - 17377325
Alignment:
| Q |
1 |
ttaatttctttacttttattttcttttattctccaaaaccacacataacaacccatccatcatcctaatttctacacccatacaccaatcccaaaactaa |
100 |
Q |
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| T |
17377824 |
ttaatttctttacttttgttttcttttattctccaaaaccacatataacaacccatccatcatcctaatttctacacccatgcaccaatcccaaaactaa |
17377725 |
T |
|
| Q |
101 |
taaccatgatcagatcttcaagctacatcaagagataaagacaaaatctagatttatatcaaggatgtgtgaagcaatccaatcaataaggcatccttct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
17377724 |
taaccatgatcagatcttcaagctacatcaagagataaagacaaaatctagatttatatcaaggatgtg--aagcaatccaatcaataaggcatccttct |
17377627 |
T |
|
| Q |
201 |
tcaaacaatcttttgagcttttattactcattcactttatttaccttttcatgctaaaacattgaggataatgtccaattcaaatatggagtggggtacc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
17377626 |
tcaaacaatcttttgagcttttattactcattcactttatttaccttttcatgctaaaacattgagtataatgtccaattcaaatatggagtggggtacc |
17377527 |
T |
|
| Q |
301 |
taatcttgttcttctttaatctatgttttcttttgtttttcttactttgactattacagtcaagttactcatttgcttgaaaattttgttataatatact |
400 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
17377526 |
taattttgttcttctttaatctatgttttcttttgtttttcttactttgactattacagtcaagttactcatttgcttgaacattttgttataatatact |
17377427 |
T |
|
| Q |
401 |
tgtaattttaattcttgtgtatgtggggatagatggtaagtaaatttttatttgatgaaccaactccatgcttgagaagttagccctaaaaatgtgagat |
500 |
Q |
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| T |
17377426 |
tgtaattttaattcttgtgtatgtgtgaatagatggtaagtaaatttttatctgatgaaccaactccatgcttgagaagttagccctataaatgtgagat |
17377327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 9 - 242
Target Start/End: Complemental strand, 17368725 - 17368499
Alignment:
| Q |
9 |
tttacttttattttcttttattctccaaaaccacacataacaacccatccatcatcctaatttctacacccatacac--caatcccaaaactaataacca |
106 |
Q |
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|||| |||| ||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||| |||||||||||| |
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| T |
17368725 |
tttaattttgttttcttatattctccaaaaccacacataacaatccatcc-------taatttctacacccatacacaccaatcccataactaataacca |
17368633 |
T |
|
| Q |
107 |
tgatcagatcttcaagctacatcaagagataaagacaaaatctagatttatatcaaggatgtgtgaagcaatccaatcaataaggcatccttcttcaaac |
206 |
Q |
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||||| |||||||||| ||||| |||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
17368632 |
tgatcggatcttcaaggtacattaagagataaagagaaattctagatttatatcaaggatgtg--aagcaatccaatcaataaggcatccttcttcaaac |
17368535 |
T |
|
| Q |
207 |
aatcttttgagcttttattactcattcactttattt |
242 |
Q |
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||||||||||||||| ||||||||||| |||||||| |
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| T |
17368534 |
aatcttttgagctttcattactcattcgctttattt |
17368499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 265 - 453
Target Start/End: Complemental strand, 17368344 - 17368163
Alignment:
| Q |
265 |
aggataatgtccaattcaaatatggagtggggtacctaatcttgttcttctttaatctatgttttcttttgtttttcttactttgactattacagtcaag |
364 |
Q |
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||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
17368344 |
aggataatgtcgaattcaaatatggggtggggtacctaatcttgttcttctttaatctatgttttcttttgtttttcttact----ctattccagtcaaa |
17368249 |
T |
|
| Q |
365 |
ttactcatttgcttgaaaattttgttataatatacttgtaattttaattcttgtgtatgtggggatagatggtaagtaaatttttattt |
453 |
Q |
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| T |
17368248 |
ttactca-ttgcttgaacattttgttttaatatacttgtaaatttaattct--tgtctgtgtggatagatggttagtaaatttgtattt |
17368163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 348
Target Start/End: Original strand, 17153691 - 17153736
Alignment:
| Q |
303 |
atcttgttcttctttaatctatgttttcttttgtttttcttacttt |
348 |
Q |
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||||| || |||||||||||||| |||||||||||||| ||||||| |
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| T |
17153691 |
atcttattattctttaatctatgatttcttttgtttttattacttt |
17153736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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