View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20597_low_2 (Length: 466)
Name: NF20597_low_2
Description: NF20597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20597_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 400; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 14 - 457
Target Start/End: Original strand, 12268453 - 12268889
Alignment:
| Q |
14 |
gaaggtggaagtgagagaaatttaaagagttagaaaattgaaatgtaatttaaaaggaaaattataaagcactaataacaaaaagattgttacaacttac |
113 |
Q |
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| T |
12268453 |
gaaggtggaagtgagagaaatttaaagagttagaaaattgaaatgtaatttaaaaggaaaattataaagcactaataacaaaaagattgttacaacgtac |
12268552 |
T |
|
| Q |
114 |
aaagtatgaaacacattttggaaatgttacaaaatcaccatagcagtaacaatttaacaaatgttacaaggtgagtgagtgagtgttactaaaagtcaca |
213 |
Q |
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| T |
12268553 |
aaagtatgaaacacattttggaaatgttacaaaatcaccatatcagtaacaatttaacaaatgttacaaggtgagtgagtgagtgttactaaaagtcaca |
12268652 |
T |
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| Q |
214 |
aatgcagtagtggctacccatccccccatatcaatattttcatttattactaataaattataaattattttatagaatcgtttgctat-aaaaaataaag |
312 |
Q |
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| T |
12268653 |
aatgcagtagtggcta--------cccatatcaatattttcatttattactaataaattataaattattttatagaatcgtttgctataaaaaaataaag |
12268744 |
T |
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| Q |
313 |
gtctaatgcaaatatctttttgggtgagtcatctgcaaaatctaaaacatcacaaactggagaattttagtccagattcagaaaagataaatagctagaa |
412 |
Q |
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| T |
12268745 |
gtctaatgcaaatatctttttgggtgagtcatctgcaaaatctaaaacatcacaaactggagaattttagtccagattcagaaaagataaatagctagaa |
12268844 |
T |
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| Q |
413 |
gagttatggtagttagtcaagtaaaacaatgcgttgtgatgatgt |
457 |
Q |
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| T |
12268845 |
gagttatggtagttagtcaagtaaaacaatgcgttgtgatgatgt |
12268889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 188 - 301
Target Start/End: Original strand, 12270163 - 12270276
Alignment:
| Q |
188 |
gtgagtgagtgttactaaaagtcacaaatgcagtagtggctacccatccccccatatcaatattttcatttattactaataaattataaattattttata |
287 |
Q |
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| T |
12270163 |
gtgagtaagtgttacaaaaagtcataaatgtagtagtggctaccaatcaccccatataaatattttcatttatttgcaataaattataaattactttaaa |
12270262 |
T |
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| Q |
288 |
gaatcgtttgctat |
301 |
Q |
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| T |
12270263 |
gaatcgttggctat |
12270276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 17032022 - 17032100
Alignment:
| Q |
28 |
gagaaatttaaagagttagaaaattgaaatgtaatttaaaaggaaaattataaagcactaataacaaaaagattgttacaa |
108 |
Q |
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| T |
17032022 |
gagaaatttaaa-agttagaaaattgaaatgtattttaaaaggcaaattataaa-cactaataactaaaagagagttacaa |
17032100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 17562458 - 17562536
Alignment:
| Q |
28 |
gagaaatttaaagagttagaaaattgaaatgtaatttaaaaggaaaattataaagcactaataacaaaaagattgttacaa |
108 |
Q |
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| T |
17562458 |
gagaaatttaaa-agttagaaaattgaaatgtattttaaaaggcaaattataaa-cactaataactaaaagagagttacaa |
17562536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 46 - 99
Target Start/End: Complemental strand, 17030627 - 17030575
Alignment:
| Q |
46 |
gaaaattgaaatgtaatttaaaaggaaaattataaagcactaataacaaaaaga |
99 |
Q |
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| T |
17030627 |
gaaaactgaaatgtattttaaaaggaaaattataaa-cactaataactaaaaga |
17030575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 46 - 99
Target Start/End: Complemental strand, 17561063 - 17561011
Alignment:
| Q |
46 |
gaaaattgaaatgtaatttaaaaggaaaattataaagcactaataacaaaaaga |
99 |
Q |
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| T |
17561063 |
gaaaactgaaatgtattttaaaaggaaaattataaa-cactaataactaaaaga |
17561011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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