View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20597_low_5 (Length: 315)

Name: NF20597_low_5
Description: NF20597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20597_low_5
NF20597_low_5
[»] scaffold0003 (1 HSPs)
scaffold0003 (19-300)||(343297-343577)


Alignment Details
Target: scaffold0003 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 19 - 300
Target Start/End: Original strand, 343297 - 343577
Alignment:
Q  19 ataagcccttgttttgaagttacgaaccgtctttccagtaagtacgtcgatttttaaagttactgtgcattagtttttgacatatggtttcagtttagct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  343297 ataagcccttgttttgaagttacgaaccgtctttccagtaagtacgtcgatttttaaagttactgtgcactagtttttgacatatggtttcagtttagct 343396  T
Q  119 ttaacctaggatttcagttctcacttgttacattgtactgatatctaattaggaatgcatcattttgcttctcaggaagctaaggttgcttacaccgggg 218  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  343397 tcaacctaggatttcagttctcacttgttacattgtactgatatctaattagggatgcatcattttgcttctcaggaagctaaggttgcttacaccgggg 343496  T
Q  219 agaaccatctgcgccgagaatgtgaaaaatgggaaaaatgttgcttcctcgttatagtgatcatgtcagtttatgacctttg 300  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  343497 agaaccatctgcgccgagaaagtgaaaaatggg-aaaatgttgcttcctcgttatagtgatcatgtcagtttatgacctttg 343577  T

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