View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20598_high_10 (Length: 455)
Name: NF20598_high_10
Description: NF20598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20598_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 389; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 13 - 436
Target Start/End: Complemental strand, 26258071 - 26257647
Alignment:
| Q |
13 |
aatatcatttaagaaaaa-cattagcattatcaagcttcgcatacacggtccatccaattccagattgcttcatccaaaatatttgcataaaccaatgta |
111 |
Q |
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| T |
26258071 |
aatatcatttaagaaaaaacattagcattatcaagcttcgcatacacggtccatccaattccagattgcttcatccaaaatatttgcataaaccgatgta |
26257972 |
T |
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| Q |
112 |
taagtcgatatatcatagatgaagatcatagtgattcaaatccaagttactataaaacaaaatgatagaaatatcatctaagacaatggcgaaatataaa |
211 |
Q |
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| T |
26257971 |
taagtcgatatatcatagatgaagatcatagtgattcaaatccaagttactataaaacaaaatgatagaaatatcatctaagacaatggtgaaatataaa |
26257872 |
T |
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| Q |
212 |
ttactatttcctacttcctattttagatcctattaagcaaatctaaccgattgtctcatccatcatccgcaagacaatgtcgcgtaagtgtatcctcctc |
311 |
Q |
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| T |
26257871 |
ttactatttcctacttcctattttagatcctattaagcaaatctaaccgattgtctcatccatcatccgcaagacaatgtcgcgtaagtgtatcctcctc |
26257772 |
T |
|
| Q |
312 |
ctatggtatcaaatgcttctcatcttcttttgtacctccatttccaatttcactttcatccagcattttgatatagttggagttactgatctaatattca |
411 |
Q |
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| T |
26257771 |
ctatggtatcaaatgcttctcatcttcttttgtacctccatttccaacttcactttcatccaccattttgatagagttggggttactgatctaatattca |
26257672 |
T |
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| Q |
412 |
aatgaataccattagacattagttc |
436 |
Q |
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| T |
26257671 |
aataaataccattagacattagttc |
26257647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 413
Target Start/End: Complemental strand, 26252841 - 26252775
Alignment:
| Q |
347 |
ctccatttccaatttcactttcatccagcattttgatatagttggagttactgatctaatattcaaa |
413 |
Q |
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| T |
26252841 |
ctccatttctaatttcactttcatgctctactttgatggagttggagttgctgatctaatattcaaa |
26252775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 177
Target Start/End: Complemental strand, 26219113 - 26219029
Alignment:
| Q |
93 |
atttgcataaaccaatgtataagtcgatatatcatagatgaagatcatagtgattcaaatccaagttactataaaacaaaatgat |
177 |
Q |
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|||||||||||| || |||||||||||||| ||| || || |||| | | |||||||||||||| | ||||||||||||||| |
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| T |
26219113 |
atttgcataaactgatacataagtcgatatattatatataaacatcaaaataattcaaatccaagtcatcataaaacaaaatgat |
26219029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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