View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20598_high_16 (Length: 414)
Name: NF20598_high_16
Description: NF20598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20598_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 1e-91; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 36057217 - 36057395
Alignment:
| Q |
1 |
ccttgccggcaatgctgagaatccatatgtgcctcgtaattatcaagagatccatacctgaagtgattaggggctcgattcctgagagcgaaagtttcaa |
100 |
Q |
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| T |
36057217 |
ccttgccggcaatgctgagaatccatacgtgcctcgtaattatcaagagatccatacctgaagtgattaggggttcgattcctgagagcgaaagtttcaa |
36057316 |
T |
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| Q |
101 |
aaagttcttttaaaccacatagcaattctttttcaagaatgataaggttgagataagtagtgttttatttaagctcatt |
179 |
Q |
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| T |
36057317 |
aaagttcttttaaaccacatagcaattctttttcaagaatgataaggttgagataagtagtgttttatttaagctcatt |
36057395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 173 - 307
Target Start/End: Complemental strand, 36056854 - 36056720
Alignment:
| Q |
173 |
gctcattagttagattctcaactttattcttctgtaaaggccaaaagcaattcaactactccaaccacaatctctctttcccttttaccaaatctttact |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
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| T |
36056854 |
gctcattagttagattctcaactttattcttctgtaaaggtcaaaagcaattcaactactccaaccacaatctttctttcccttttaccaaatcttcact |
36056755 |
T |
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| Q |
273 |
catattcaagtcttaatccaaaactttctcacaag |
307 |
Q |
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| T |
36056754 |
catattcacgtcttaatccaaaactttctcacaag |
36056720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 372 - 408
Target Start/End: Complemental strand, 36056655 - 36056619
Alignment:
| Q |
372 |
ttagtgcatttttagattgatagtaagatgatgttag |
408 |
Q |
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| T |
36056655 |
ttagtgcatttttagattggtagtaagatgatgttag |
36056619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 25461738 - 25461788
Alignment:
| Q |
26 |
tatgtgcctcgtaattatcaagagatccatacctgaagtgattaggggctc |
76 |
Q |
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| T |
25461738 |
tatgtgcctcatgattatcaaaatatccatacctgaaatgattaggggctc |
25461788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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