View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20598_high_17 (Length: 392)
Name: NF20598_high_17
Description: NF20598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20598_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 153; Significance: 5e-81; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 197 - 377
Target Start/End: Original strand, 31498357 - 31498537
Alignment:
| Q |
197 |
tctagcataacttggagaaaaagtttaacaaattgaacataaaagggaaggaaagaataataatattgatgaatgtagctcaccatatttttcagggtgt |
296 |
Q |
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| T |
31498357 |
tctagcataacttggagaatttttttgacaaattgaacataaaagggaaggaaaaaataataatattgatgaatgtagctcaccatatttttcagggtgt |
31498456 |
T |
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| Q |
297 |
ttgataagaccaatcaaggggtcatatatgtttgtataaataactctgcttcctggaagcattgcttgtaattgaagtaaa |
377 |
Q |
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| T |
31498457 |
ttgataagaccaatcaagggatcatatatgtttgtataaataactctgcttcctggaagcattgcttgtaattgaagtaaa |
31498537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 83 - 197
Target Start/End: Original strand, 31497921 - 31498035
Alignment:
| Q |
83 |
aatagataattatatttgagatactatcagatactaaatataggttcctcatttgcgacgctataagactctagccttttctagtagactcaatcctgat |
182 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
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| T |
31497921 |
aatagataattatattcgagatactatcagatactaaatataggttcctcatttgcgaccctataagactctagccttttctagtagactgaatcctgat |
31498020 |
T |
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| Q |
183 |
tgaactttatctttt |
197 |
Q |
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| T |
31498021 |
tgagctttatctttt |
31498035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 251 - 377
Target Start/End: Original strand, 31528835 - 31528967
Alignment:
| Q |
251 |
gaataataatattgatgaatgtagctcaccatatttttcagg------gtgtttgataagaccaatcaaggggtcatatatgtttgtataaataactctg |
344 |
Q |
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| T |
31528835 |
gaataataatattgataattgtaactcaccatatttttcaggcctagggtgtttgataaggccaatcaaggggtcatatatgtttgtataaataactctg |
31528934 |
T |
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| Q |
345 |
cttcctggaagcattgcttgtaattgaagtaaa |
377 |
Q |
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| T |
31528935 |
cttcctgaaagaattgcttgtaattgaagtaaa |
31528967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 90
Target Start/End: Original strand, 31475924 - 31475985
Alignment:
| Q |
28 |
atgataaaaatgcaaacagtataaagaattatcttccacaaagtccagtttccacaatagata |
90 |
Q |
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| T |
31475924 |
atgatgaaactgaaaacagtgtaaagaattatcttcaacaaattccagtttcca-aatagata |
31475985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 254
Target Start/End: Complemental strand, 5587498 - 5587441
Alignment:
| Q |
197 |
tctagcataacttggagaaaaagtttaacaaattgaacataaaagggaaggaaagaat |
254 |
Q |
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| T |
5587498 |
tctagcataagttgcagaaaaagtttgccaaattgaacataaaagggaagaaaagaat |
5587441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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