View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20598_high_20 (Length: 351)
Name: NF20598_high_20
Description: NF20598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20598_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 46914644 - 46914312
Alignment:
| Q |
1 |
acacagcaacaacaaacacaaggacaataaacgaactctgtttgtcacccacgatctctaccaacaacatcaaacaataaattccaagaaattacagcat |
100 |
Q |
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| T |
46914644 |
acacagcaacaacaaacacaaggacaataaacgaactctgtttgtcacccacgatctctaccaacaacatcaaacaataaattccaagaaattacagcat |
46914545 |
T |
|
| Q |
101 |
accttttattttctttcacaaaaagatnnnnnnnncctagagattagtactatgataactgaaaacaaacaaaactatttaatctctgcaattatnnnnn |
200 |
Q |
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| T |
46914544 |
actttttattttctttcacaaaaagataaaaaaaacctagagattagtactatgataactgaaaacaaacaaaactatttaaactctgcaattataaaaa |
46914445 |
T |
|
| Q |
201 |
nnncaaaacaacattgaaacaccaaaatgtccttctccaacccccaccaacacacccccattggttttgcttactgtcnnnnnnngtcatcaaaatacta |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
46914444 |
aaacaaaacaacattgaaacaccaaaatgtccttctccaacccccaccaacacacccccattggttttgcttactgtctttttttgtcatcaaaatacta |
46914345 |
T |
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| Q |
301 |
accttgttcccatagtcgaaacccaaggcaatt |
333 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
46914344 |
accttgttcccatagtcgaaacccaaggcaatt |
46914312 |
T |
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