View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20598_high_23 (Length: 341)

Name: NF20598_high_23
Description: NF20598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20598_high_23
NF20598_high_23
[»] chr3 (7 HSPs)
chr3 (106-334)||(13610341-13610572)
chr3 (113-160)||(10438091-10438138)
chr3 (116-160)||(44162157-44162201)
chr3 (122-199)||(9370993-9371070)
chr3 (113-146)||(36660379-36660412)
chr3 (116-160)||(36633888-36633932)
chr3 (116-160)||(40320017-40320061)
[»] chr6 (4 HSPs)
chr6 (113-193)||(7339037-7339117)
chr6 (124-160)||(29377195-29377231)
chr6 (113-163)||(3840987-3841036)
chr6 (107-163)||(14661797-14661852)
[»] chr4 (12 HSPs)
chr4 (107-163)||(13641875-13641931)
chr4 (123-164)||(37066867-37066908)
chr4 (116-160)||(54131602-54131646)
chr4 (113-160)||(13937341-13937388)
chr4 (113-160)||(24426101-24426148)
chr4 (116-161)||(4440586-4440631)
chr4 (108-160)||(10373848-10373901)
chr4 (116-160)||(707931-707975)
chr4 (116-160)||(728678-728722)
chr4 (115-159)||(17256353-17256397)
chr4 (116-160)||(40696467-40696511)
chr4 (116-160)||(43318370-43318414)
[»] chr7 (5 HSPs)
chr7 (113-160)||(16717554-16717601)
chr7 (113-160)||(17691764-17691811)
chr7 (106-146)||(24217299-24217339)
chr7 (116-160)||(24482103-24482147)
chr7 (116-160)||(32985431-32985475)
[»] chr1 (10 HSPs)
chr1 (113-160)||(13060203-13060250)
chr1 (108-160)||(19275809-19275861)
chr1 (123-193)||(41073097-41073167)
chr1 (116-160)||(4652577-4652621)
chr1 (116-160)||(11921627-11921671)
chr1 (116-160)||(11933025-11933069)
chr1 (116-160)||(20582596-20582640)
chr1 (116-160)||(21443145-21443189)
chr1 (116-160)||(29018819-29018863)
chr1 (116-160)||(37691650-37691694)
[»] chr8 (4 HSPs)
chr8 (114-231)||(13773898-13774016)
chr8 (116-160)||(24983357-24983401)
chr8 (116-160)||(33022287-33022331)
chr8 (116-160)||(42709207-42709251)
[»] chr2 (7 HSPs)
chr2 (106-160)||(32738164-32738218)
chr2 (108-160)||(734811-734863)
chr2 (106-162)||(44185485-44185541)
chr2 (106-165)||(5954208-5954266)
chr2 (117-160)||(31963249-31963292)
chr2 (203-244)||(25850865-25850906)
chr2 (116-160)||(44719673-44719717)
[»] scaffold0133 (1 HSPs)
scaffold0133 (197-228)||(10206-10237)
[»] scaffold0006 (1 HSPs)
scaffold0006 (116-160)||(120302-120346)
[»] chr5 (2 HSPs)
chr5 (116-160)||(13610455-13610499)
chr5 (116-160)||(33641936-33641980)


Alignment Details
Target: chr3 (Bit Score: 138; Significance: 4e-72; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 106 - 334
Target Start/End: Complemental strand, 13610572 - 13610341
Alignment:
Q  106 gggtacataaaatatgatttattttattctatttgtgtgtatccattaagatatttgtttcgtgtcggtccatagtgaactttatttgttgatac----- 200  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||         
T  13610572 gggtacataaaatatgatttattttattatatttgtgtgtatccattaaaatattcgtttcgtgttggtccatagtgaactttatttgttgatacggtgc 13610473  T
Q  201 ----ataatttagatcatccttaattatatgtctacccctggcaacgcaggataagtacacaagtgcctatatatattttttaagtgtccatactaactg 296  Q
        ||||||||||||||||||||||||||||||||||  |||||||| |||||||||||||||||  | |||||||||||||||||||||||| |||||    
T  13610472 ttacataatttagatcatccttaattatatgtctaccctgggcaacgccggataagtacacaagtg--tctatatattttttaagtgtccataccaactg 13610375  T
Q  297 agctaagcaaactcatgaccgatactgttttgtttcaa 334  Q
    |||||||    |||||||||| ||||||||||||||||    
T  13610374 agctaag----ctcatgaccggtactgttttgtttcaa 13610341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 160
Target Start/End: Original strand, 10438091 - 10438138
Alignment:
Q  113 taaaatatgatttattttattctatttgtgtgtatccattaagatatt 160  Q
    |||||||||||||| |||||| |||||||||||| |||||||||||||    
T  10438091 taaaatatgatttactttattttatttgtgtgtacccattaagatatt 10438138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 160
Target Start/End: Complemental strand, 44162201 - 44162157
Alignment:
Q  116 aatatgatttattttattctatttgtgtgtatccattaagatatt 160  Q
    |||||||||||||||||| |||||||||||||  |||||||||||    
T  44162201 aatatgatttattttattatatttgtgtgtatttattaagatatt 44162157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 199
Target Start/End: Complemental strand, 9371070 - 9370993
Alignment:
Q  122 atttattttattctatttgtgtgtatccattaagatatttgtttcgtgtcggtccatagtgaactttatttgttgata 199  Q
    |||||||| |||||||||||||||| |||||| |||||   || |||||| |||| ||| ||| |||||||| |||||    
T  9371070 atttatttaattctatttgtgtgtacccattatgatatccattccgtgtcagtccttagggaattttatttgctgata 9370993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 146
Target Start/End: Complemental strand, 36660412 - 36660379
Alignment:
Q  113 taaaatatgatttattttattctatttgtgtgta 146  Q
    ||||||||| ||||||||||||||||||||||||    
T  36660412 taaaatatggtttattttattctatttgtgtgta 36660379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 36633888 - 36633932
Alignment:
Q  116 aatatgatttattttattctatttgtgtgtatccattaagatatt 160  Q
    |||||||  ||||||||| ||||||||||||| ||||||||||||    
T  36633888 aatatgacatattttattatatttgtgtgtattcattaagatatt 36633932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 40320017 - 40320061
Alignment:
Q  116 aatatgatttattttattctatttgtgtgtatccattaagatatt 160  Q
    |||||||| ||||||||| |||||||||||||  |||||||||||    
T  40320017 aatatgatatattttattatatttgtgtgtatttattaagatatt 40320061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 113 - 193
Target Start/End: Complemental strand, 7339117 - 7339037
Alignment:
Q  113 taaaatatgatttattttattctatttgtgtgtatccattaagatatttgtttcgtgtcggtccatagtgaactttatttg 193  Q
    ||||||||  ||||||||||| |||| ||||||||||||||||||||| || || || |||||||| ||||| ||||||||    
T  7339117 taaaatatagtttattttattatattcgtgtgtatccattaagatattcgtctcatgccggtccatggtgaattttatttg 7339037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 160
Target Start/End: Original strand, 29377195 - 29377231
Alignment:
Q  124 ttattttattctatttgtgtgtatccattaagatatt 160  Q
    ||||||||||||||||||||||||| |||||||||||    
T  29377195 ttattttattctatttgtgtgtatcaattaagatatt 29377231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 163
Target Start/End: Original strand, 3840987 - 3841036
Alignment:
Q  113 taaaatatgatttattttattctatttgtgtgtatccattaagatatttgt 163  Q
    |||||||||| |||||||||||||||| |||||| ||| ||||||||||||    
T  3840987 taaaatatgaattattttattctatttatgtgta-ccaataagatatttgt 3841036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 14661852 - 14661797
Alignment:
Q  107 ggtacataaaatatgatttattttattctatttgtgtgtatccattaagatatttgt 163  Q
    ||||| ||||||||| |||| ||||||||||| ||||||| ||||| ||||||||||    
T  14661852 ggtacttaaaatatggtttactttattctattagtgtgta-ccatttagatatttgt 14661797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 13641931 - 13641875
Alignment:
Q  107 ggtacataaaatatgatttattttattctatttgtgtgtatccattaagatatttgt 163  Q
    ||||| ||||||||| |||||||||||||||||||||||| || |||||||||||||    
T  13641931 ggtacttaaaatatggtttattttattctatttgtgtgtaaccgttaagatatttgt 13641875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 37066867 - 37066908
Alignment:
Q  123 tttattttattctatttgtgtgtatccattaagatatttgtt 164  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  37066867 tttattttattctatttgtgtgtattcattaagatatttgtt 37066908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 160
Target Start/End: Complemental strand, 54131646 - 54131602
Alignment:
Q  116 aatatgatttattttattctatttgtgtgtatccattaagatatt 160  Q
    |||||||||||||||||||||||||||||||   |||||||||||    
T  54131646 aatatgatttattttattctatttgtgtgtacatattaagatatt 54131602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 113 - 160
Target Start/End: Original strand, 13937341 - 13937388
Alignment:
Q  113 taaaatatgatttattttattctatttgtgtgtatccattaagatatt 160  Q
    ||||||||||||| ||||||| ||||| | ||||||||||||||||||    
T  13937341 taaaatatgatttcttttattatatttatatgtatccattaagatatt 13937388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 113 - 160
Target Start/End: Complemental strand, 24426148 - 24426101
Alignment:
Q  113 taaaatatgatttattttattctatttgtgtgtatccattaagatatt 160  Q
    ||||||||  ||||||||||| |||||||||||||||||||| |||||    
T  24426148 taaaatatagtttattttattatatttgtgtgtatccattaaaatatt 24426101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 161
Target Start/End: Original strand, 4440586 - 4440631
Alignment:
Q  116 aatatgatttattttattctatttgtgtgtatccattaagatattt 161  Q
    |||||||| ||||||||| |||||||||||||  ||||||||||||    
T  4440586 aatatgatatattttattatatttgtgtgtatatattaagatattt 4440631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 10373901 - 10373848
Alignment:
Q  108 gtacataaaatatgatttattttattctatttgtgtgt-atccattaagatatt 160  Q
    |||| |||||||||||||||| |||||||||| ||||| | |||||||||||||    
T  10373901 gtacttaaaatatgatttattctattctatttatgtgtaacccattaagatatt 10373848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 707931 - 707975
Alignment:
Q  116 aatatgatttattttattctatttgtgtgtatccattaagatatt 160  Q
    |||||||| ||||||||| |||||||||||||  |||||||||||    
T  707931 aatatgatatattttattatatttgtgtgtatttattaagatatt 707975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 160
Target Start/End: Complemental strand, 728722 - 728678
Alignment:
Q  116 aatatgatttattttattctatttgtgtgtatccattaagatatt 160  Q
    |||||||| ||||||||| |||||||||||||  |||||||||||    
T  728722 aatatgatatattttattatatttgtgtgtatttattaagatatt 728678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 159
Target Start/End: Complemental strand, 17256397 - 17256353
Alignment:
Q  115 aaatatgatttattttattctatttgtgtgtatccattaagatat 159  Q
    ||||||||||||||||||||||||||  |||| | ||||||||||    
T  17256397 aaatatgatttattttattctatttggatgtacctattaagatat 17256353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 40696467 - 40696511
Alignment:
Q  116 aatatgatttattttattctatttgtgtgtatccattaagatatt 160  Q
    |||||||| ||||||||| |||||||||||||  |||||||||||    
T  40696467 aatatgatatattttattatatttgtgtgtatttattaagatatt 40696511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 160
Target Start/End: Complemental strand, 43318414 - 43318370
Alignment:
Q  116 aatatgatttattttattctatttgtgtgtatccattaagatatt 160  Q
    |||||||| ||||||||| |||||||||||||  |||||||||||    
T  43318414 aatatgatatattttattatatttgtgtgtatttattaagatatt 43318370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 160
Target Start/End: Original strand, 16717554 - 16717601
Alignment:
Q  113 taaaatatgatttattttattctatttgtgtgtatccattaagatatt 160  Q
    |||||||||||||||| ||||||||| |||||||| ||||||||||||    
T  16717554 taaaatatgatttattctattctattcgtgtgtattcattaagatatt 16717601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 160
Target Start/End: Original strand, 17691764 - 17691811
Alignment:
Q  113 taaaatatgatttattttattctatttgtgtgtatccattaagatatt 160  Q
    |||||||||||||||| ||||||||| |||||||| ||||||||||||    
T  17691764 taaaatatgatttattctattctattcgtgtgtattcattaagatatt 17691811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 146
Target Start/End: Complemental strand, 24217339 - 24217299
Alignment:
Q  106 gggtacataaaatatgatttattttattctatttgtgtgta 146  Q
    |||||| |||||||| |||||||||||| ||||||||||||    
T  24217339 gggtacttaaaatattatttattttattttatttgtgtgta 24217299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 24482103 - 24482147
Alignment:
Q  116 aatatgatttattttattctatttgtgtgtatccattaagatatt 160  Q
    |||||||| ||||||||| ||||||||| |||| |||||||||||    
T  24482103 aatatgatatattttattatatttgtgtatatctattaagatatt 24482147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 32985431 - 32985475
Alignment:
Q  116 aatatgatttattttattctatttgtgtgtatccattaagatatt 160  Q
    |||||||| ||||||||| |||||||||||||  |||||||||||    
T  32985431 aatatgatatattttattatatttgtgtgtatttattaagatatt 32985475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 160
Target Start/End: Original strand, 13060203 - 13060250
Alignment:
Q  113 taaaatatgatttattttattctatttgtgtgtatccattaagatatt 160  Q
    |||||||| |||||||||||| |||| |||||||||||||||||||||    
T  13060203 taaaatataatttattttattatattcgtgtgtatccattaagatatt 13060250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 19275809 - 19275861
Alignment:
Q  108 gtacataaaatatgatttattttattctatttgtgtgtatccattaagatatt 160  Q
    |||| ||||||||||||||||||||| |||| ||||| ||| |||||||||||    
T  19275809 gtacttaaaatatgatttattttattttattcgtgtgcatcgattaagatatt 19275861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 193
Target Start/End: Original strand, 41073097 - 41073167
Alignment:
Q  123 tttattttattctatttgtgtgtatccattaagatatttgtttcgtgtcggtccatagtgaactttatttg 193  Q
    ||||||||||||||||||||||| |||||||| ||||| ||| |||  ||||   ||||||| ||||||||    
T  41073097 tttattttattctatttgtgtgtgtccattaatatattcgttgcgtaccggtaagtagtgaattttatttg 41073167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 4652577 - 4652621
Alignment:
Q  116 aatatgatttattttattctatttgtgtgtatccattaagatatt 160  Q
    |||||||| ||||||||| |||||||||||||  |||||||||||    
T  4652577 aatatgatatattttattatatttgtgtgtatttattaagatatt 4652621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 160
Target Start/End: Complemental strand, 11921671 - 11921627
Alignment:
Q  116 aatatgatttattttattctatttgtgtgtatccattaagatatt 160  Q
    |||||||| ||||||||| |||||||||||||| |||| ||||||    
T  11921671 aatatgatatattttattatatttgtgtgtatctattatgatatt 11921627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 11933025 - 11933069
Alignment:
Q  116 aatatgatttattttattctatttgtgtgtatccattaagatatt 160  Q
    |||||||| ||||||||| |||||||||||||  |||||||||||    
T  11933025 aatatgatatattttattatatttgtgtgtatttattaagatatt 11933069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 20582596 - 20582640
Alignment:
Q  116 aatatgatttattttattctatttgtgtgtatccattaagatatt 160  Q
    |||||||| ||||||||| |||||||||||||  |||||||||||    
T  20582596 aatatgatatattttattatatttgtgtgtatttattaagatatt 20582640  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 160
Target Start/End: Complemental strand, 21443189 - 21443145
Alignment:
Q  116 aatatgatttattttattctatttgtgtgtatccattaagatatt 160  Q
    |||||||| ||||||||| |||||||||||||  |||||||||||    
T  21443189 aatatgatatattttattatatttgtgtgtatttattaagatatt 21443145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 29018819 - 29018863
Alignment:
Q  116 aatatgatttattttattctatttgtgtgtatccattaagatatt 160  Q
    |||||||| ||||||||| |||||||||||||  |||||||||||    
T  29018819 aatatgatatattttattatatttgtgtgtatttattaagatatt 29018863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 160
Target Start/End: Complemental strand, 37691694 - 37691650
Alignment:
Q  116 aatatgatttattttattctatttgtgtgtatccattaagatatt 160  Q
    |||||||| ||||||||| |||||||||||||  |||||||||||    
T  37691694 aatatgatatattttattatatttgtgtgtatttattaagatatt 37691650  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 231
Target Start/End: Original strand, 13773898 - 13774016
Alignment:
Q  114 aaaatatgatttattttattctatttgtgtgtatccattaagatatttgtttcgtgtcggtccatagtgaactttatttgttgata-cataatttagatc 212  Q
    ||||||||||||||| |||||| ||| || ||||| |||||||||||||||  ||   |||| ||| | || ||||||  | |||| || ||||| ||||    
T  13773898 aaaatatgatttattatattctgtttatgggtatcaattaagatatttgttctgtaatggtctataataaattttattcatggatatcaaaattttgatc 13773997  T
Q  213 atccttaattatatgtcta 231  Q
    |||||||||||||||||||    
T  13773998 atccttaattatatgtcta 13774016  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 24983357 - 24983401
Alignment:
Q  116 aatatgatttattttattctatttgtgtgtatccattaagatatt 160  Q
    |||||||| ||||||||| |||||||||||||  |||||||||||    
T  24983357 aatatgatgtattttattatatttgtgtgtatttattaagatatt 24983401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 33022287 - 33022331
Alignment:
Q  116 aatatgatttattttattctatttgtgtgtatccattaagatatt 160  Q
    |||||| ||||||||||| |||||||||||||  |||||||||||    
T  33022287 aatatggtttattttattatatttgtgtgtatttattaagatatt 33022331  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 42709207 - 42709251
Alignment:
Q  116 aatatgatttattttattctatttgtgtgtatccattaagatatt 160  Q
    |||||||| ||||||||| |||||||||||||  |||||||||||    
T  42709207 aatatgatatattttattatatttgtgtgtatttattaagatatt 42709251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 160
Target Start/End: Complemental strand, 32738218 - 32738164
Alignment:
Q  106 gggtacataaaatatgatttattttattctatttgtgtgtatccattaagatatt 160  Q
    |||||| ||||||||||| || |||||  ||||||||||||||||||||||||||    
T  32738218 gggtacttaaaatatgatgtactttatgttatttgtgtgtatccattaagatatt 32738164  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 734863 - 734811
Alignment:
Q  108 gtacataaaatatgatttattttattctatttgtgtgtatccattaagatatt 160  Q
    |||| |||||||||||||||||||| ||||||||||||| | ||||| |||||    
T  734863 gtacttaaaatatgatttattttatactatttgtgtgtaccgattaaaatatt 734811  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 162
Target Start/End: Complemental strand, 44185541 - 44185485
Alignment:
Q  106 gggtacataaaatatgatttattttattctatttgtgtgtatccattaagatatttg 162  Q
    |||||| ||||||||  |||||||||||||||| ||||||| | |||||||||||||    
T  44185541 gggtacttaaaatatagtttattttattctattcgtgtgtacctattaagatatttg 44185485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 106 - 165
Target Start/End: Original strand, 5954208 - 5954266
Alignment:
Q  106 gggtacataaaatatgatttattttattctatttgtgtgtatccattaagatatttgttt 165  Q
    |||||| ||||||||| ||||||||||||||||  |||||| ||||||||||||| ||||    
T  5954208 gggtacttaaaatatgctttattttattctattcatgtgta-ccattaagatattcgttt 5954266  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 117 - 160
Target Start/End: Original strand, 31963249 - 31963292
Alignment:
Q  117 atatgatttattttattctatttgtgtgtatccattaagatatt 160  Q
    ||||||||||||||||| |||||||| |||| ||||||||||||    
T  31963249 atatgatttattttattttatttgtgggtattcattaagatatt 31963292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 25850906 - 25850865
Alignment:
Q  203 aatttagatcatccttaattatatgtctacccctggcaacgc 244  Q
    ||||| ||||||||||||||||||||||| ||| ||||||||    
T  25850906 aattttgatcatccttaattatatgtctaacccgggcaacgc 25850865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 160
Target Start/End: Complemental strand, 44719717 - 44719673
Alignment:
Q  116 aatatgatttattttattctatttgtgtgtatccattaagatatt 160  Q
    |||||||| ||||||||| |||||||||||||  |||||||||||    
T  44719717 aatatgatatattttattatatttgtgtgtatttattaagatatt 44719673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 197 - 228
Target Start/End: Original strand, 10206 - 10237
Alignment:
Q  197 atacataatttagatcatccttaattatatgt 228  Q
    ||||||||||||||||||||||||||||||||    
T  10206 atacataatttagatcatccttaattatatgt 10237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 160
Target Start/End: Complemental strand, 120346 - 120302
Alignment:
Q  116 aatatgatttattttattctatttgtgtgtatccattaagatatt 160  Q
    |||||||| ||||||||| |||||||||||||  |||||||||||    
T  120346 aatatgatatattttattatatttgtgtgtatttattaagatatt 120302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 160
Target Start/End: Complemental strand, 13610499 - 13610455
Alignment:
Q  116 aatatgatttattttattctatttgtgtgtatccattaagatatt 160  Q
    ||||||||||||||||||||||| |||||||   |||||||||||    
T  13610499 aatatgatttattttattctattcgtgtgtacatattaagatatt 13610455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 160
Target Start/End: Complemental strand, 33641980 - 33641936
Alignment:
Q  116 aatatgatttattttattctatttgtgtgtatccattaagatatt 160  Q
    ||||||||||||||||||||||| |||||||   |||||||||||    
T  33641980 aatatgatttattttattctattcgtgtgtacatattaagatatt 33641936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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