View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20598_high_27 (Length: 290)

Name: NF20598_high_27
Description: NF20598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20598_high_27
NF20598_high_27
[»] chr3 (1 HSPs)
chr3 (17-274)||(7147529-7147786)
[»] chr8 (2 HSPs)
chr8 (20-97)||(19786477-19786554)
chr8 (79-109)||(14628034-14628064)
[»] chr4 (2 HSPs)
chr4 (18-117)||(13129198-13129297)
chr4 (79-117)||(12318126-12318164)
[»] chr6 (1 HSPs)
chr6 (51-131)||(28586349-28586429)
[»] chr1 (2 HSPs)
chr1 (42-106)||(18328767-18328831)
chr1 (20-98)||(18830189-18830267)
[»] chr5 (2 HSPs)
chr5 (23-65)||(8366372-8366414)
chr5 (184-274)||(23264847-23264936)


Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 17 - 274
Target Start/End: Complemental strand, 7147786 - 7147529
Alignment:
Q  17 ttgcttgggtatatttgtttatggttatttcaggaaacaaatcatggattattttacaacagaccagttcaatcattacaacaatacataccctatagag 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7147786 ttgcttgggtatatttgtttatggttatttcaggaaacaaatcatggattattttacaacagaccagttcaatcattacaacaatacataccctatagag 7147687  T
Q  117 tttcatgaatctgatacatcacaatttgatatggcacaagctacgtaaaatgtgatagctgaaacatctagatacatggatgagtaatacgaactcgtta 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7147686 tttcatgaatctgatacatcacaatttgatatggcacaagctacacaaaatgtgatagctgaaacatctagatacatggatgagtaatacgaactcgtta 7147587  T
Q  217 ggagaggaagggaagaacaatgcactatctaacatcaaataatagagatcgtggttga 274  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  7147586 ggagagcaagggaagaacaatgcactatctagcatcaaataatagagatcgtggttga 7147529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 19786554 - 19786477
Alignment:
Q  20 cttgggtatatttgtttatggttatttcaggaaacaaatcatggattattttacaacagaccagttcaatcattacaa 97  Q
    ||||||||| ||||||||||||| ||||||| ||| |||||||||| ||||| |||||||| ||||||||||||||||    
T  19786554 cttgggtatttttgtttatggttgtttcagggaacgaatcatggatgattttgcaacagactagttcaatcattacaa 19786477  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 109
Target Start/End: Complemental strand, 14628064 - 14628034
Alignment:
Q  79 accagttcaatcattacaacaatacataccc 109  Q
    |||||||||||||||||||||||||||||||    
T  14628064 accagttcaatcattacaacaatacataccc 14628034  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 13129198 - 13129297
Alignment:
Q  18 tgcttgggtatatttgtttatggttatttcaggaaacaaatcatggattattttacaacagaccagttcaatcattacaacaatacataccctatagagt 117  Q
    |||||| |||| |||||||||| || ||| ||||||||| |||||||  ||||| ||| |  | ||||||||||||||||||||||||||||||| ||||    
T  13129198 tgcttgagtatttttgtttatgattgtttgaggaaacaattcatggagaattttgcaataaccaagttcaatcattacaacaatacataccctatggagt 13129297  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 117
Target Start/End: Complemental strand, 12318164 - 12318126
Alignment:
Q  79 accagttcaatcattacaacaatacataccctatagagt 117  Q
    |||| ||||||||||||||||||||||||||||| ||||    
T  12318164 accaattcaatcattacaacaatacataccctatggagt 12318126  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 51 - 131
Target Start/End: Original strand, 28586349 - 28586429
Alignment:
Q  51 aaacaaatcatggattattttacaacagaccagttcaatcattacaacaatacataccctatagagtttcatgaatctgat 131  Q
    |||| |||||||||||||||| ||| | ||||||||||||||| ||||||||  || | ||| |||| |||||||||||||    
T  28586349 aaacgaatcatggattattttgcaaaaaaccagttcaatcattgcaacaatatctagcatatggagtgtcatgaatctgat 28586429  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 42 - 106
Target Start/End: Original strand, 18328767 - 18328831
Alignment:
Q  42 tatttcaggaaacaaatcatggattattttacaacagaccagttcaatcattacaacaatacata 106  Q
    |||||||||||| || |||||||||||||||| ||| |||| ||  |||||||||||||||||||    
T  18328767 tatttcaggaaataattcatggattattttactacaaaccaatttgatcattacaacaatacata 18328831  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 18830267 - 18830189
Alignment:
Q  20 cttgggtatatttgtttatggttatttcaggaaacaaatcatggattattttacaacagaccagttcaatcattacaac 98  Q
    ||||||||| ||||||| || || ||||||| ||| ||| |||||| ||| | ||||  ||||||||||||||||||||    
T  18830267 cttgggtatttttgtttgtgattgtttcagggaacgaataatggataattcttcaacgaaccagttcaatcattacaac 18830189  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 65
Target Start/End: Original strand, 8366372 - 8366414
Alignment:
Q  23 gggtatatttgtttatggttatttcaggaaacaaatcatggat 65  Q
    |||||| |||||||||||| |||||||||||||| ||||||||    
T  8366372 gggtatttttgtttatggtcatttcaggaaacaattcatggat 8366414  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 274
Target Start/End: Complemental strand, 23264936 - 23264847
Alignment:
Q  184 ctagatacatggatgagtaatacgaactcgttaggagaggaagggaagaacaatgcactatctaacatcaaataatagagatcgtggttga 274  Q
    ||||||||||||||||||| || ||||||||| |||||| | | | | ||||||| ||||||   ||||||||||  ||||||||||||||    
T  23264936 ctagatacatggatgagtactatgaactcgtt-ggagagcaggtggaaaacaatggactatcatccatcaaataactgagatcgtggttga 23264847  T

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