View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20598_high_29 (Length: 266)
Name: NF20598_high_29
Description: NF20598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20598_high_29 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 23368494 - 23368240
Alignment:
| Q |
1 |
agttagagacgggttaattattgattcaaatgatctcctcgtttcagattttgaatcatttgcttgctctatatatgacaatgcctcacttgaatctaca |
100 |
Q |
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| T |
23368494 |
agttagagacgggttaattattgattcagatgatctcctcgtttctgattttgaatcatttgcttgctctatagatgacaatgcctcacttgaatctaca |
23368395 |
T |
|
| Q |
101 |
ttgtagcaacaataattataaaacatnnnnnnnnnncctttgaattggtttggccatacttcaacttggaagactattaaattttgtaggcaaaatcaca |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23368394 |
ttgtagcaacaataattataaaaca-aaaaaaaaaacctttgaattggtttggccatacttcaacttggaagactattaaattttgtaggcaaaatcaca |
23368296 |
T |
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| Q |
201 |
tgctatataagtaccatttatcaatggtgagatatgattcctttgtgcctcctttg |
256 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
23368295 |
tgctatataagtaccatttatcaatggtgagataggattcttttgtgcctcctttg |
23368240 |
T |
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