View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20598_high_40 (Length: 223)

Name: NF20598_high_40
Description: NF20598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20598_high_40
NF20598_high_40
[»] chr7 (12 HSPs)
chr7 (1-201)||(1804841-1805041)
chr7 (1-201)||(41957807-41958003)
chr7 (46-198)||(45414372-45414524)
chr7 (99-203)||(10552808-10552912)
chr7 (4-105)||(2393270-2393371)
chr7 (4-102)||(11409465-11409563)
chr7 (4-99)||(31592547-31592643)
chr7 (4-99)||(17733846-17733942)
chr7 (1-194)||(13953239-13953431)
chr7 (133-199)||(13953995-13954061)
chr7 (4-52)||(28510546-28510594)
chr7 (1-41)||(45414518-45414558)
[»] chr3 (8 HSPs)
chr3 (18-201)||(52560396-52560579)
chr3 (1-95)||(18946310-18946405)
chr3 (1-95)||(45031673-45031768)
chr3 (4-102)||(53562277-53562375)
chr3 (1-79)||(4950674-4950752)
chr3 (35-98)||(18878953-18879017)
chr3 (4-97)||(37222576-37222670)
chr3 (4-97)||(47867744-47867838)
[»] scaffold0916 (1 HSPs)
scaffold0916 (4-188)||(338-523)
[»] chr1 (5 HSPs)
chr1 (1-102)||(13706297-13706399)
chr1 (4-99)||(18239657-18239753)
chr1 (4-118)||(46200953-46201068)
chr1 (4-60)||(31385562-31385618)
chr1 (4-60)||(42465115-42465171)
[»] chr2 (4 HSPs)
chr2 (1-82)||(34457167-34457248)
chr2 (5-97)||(19508015-19508108)
chr2 (4-102)||(2121061-2121160)
chr2 (4-80)||(26170621-26170697)
[»] scaffold0251 (1 HSPs)
scaffold0251 (4-99)||(1832-1928)
[»] scaffold0184 (1 HSPs)
scaffold0184 (4-102)||(28424-28523)
[»] scaffold0078 (1 HSPs)
scaffold0078 (4-102)||(44321-44420)
[»] chr8 (7 HSPs)
chr8 (4-102)||(20495310-20495409)
chr8 (4-97)||(1550783-1550876)
chr8 (9-99)||(21551528-21551617)
chr8 (9-99)||(21552574-21552663)
chr8 (4-102)||(23718482-23718581)
chr8 (5-73)||(391442-391510)
chr8 (4-58)||(44119183-44119237)
[»] scaffold1813 (1 HSPs)
scaffold1813 (1-102)||(631-733)
[»] chr5 (4 HSPs)
chr5 (4-97)||(7250246-7250340)
chr5 (4-60)||(10826837-10826893)
chr5 (1-60)||(23062433-23062492)
chr5 (177-205)||(34394089-34394117)
[»] chr4 (3 HSPs)
chr4 (4-97)||(12028125-12028219)
chr4 (4-99)||(54603974-54604070)
chr4 (1-60)||(31302501-31302560)


Alignment Details
Target: chr7 (Bit Score: 181; Significance: 6e-98; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 1804841 - 1805041
Alignment:
Q  1 aaactacattgcatgtaaataggattaagatgacttacttgtgatttacttgaagaaattaggatgattttcgagcaaatgaggtttgggtgattttgga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1804841 aaactacattgcatgtaaataggattaagatgacttacttgtgatttacttgaagaaattaggatgattttcgagcaaatgaggtttgggtgattttgga 1804940  T
Q  101 ttgaaaatgaaaatgttttgcatgtaccactgtaaccagaaaatggaagtttctgcgttcatatcatatacattaaaacgacagttaactaccgctgagt 200  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  1804941 ttgaaaatgaaaatgttttgcatgtaacactgtaactagaaaatggaggtttctgcgttcatatcatatacattagaacgacagttaactactgctgagt 1805040  T
Q  201 g 201  Q
    |    
T  1805041 g 1805041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 41958003 - 41957807
Alignment:
Q  1 aaactacattgcatgtaaataggattaagatgacttacttgtgatttacttgaagaaattaggatgattttcgagcaaatgaggtttgggtgattttgga 100  Q
    |||||||||||||| |||||||||||||||||||||    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  41958003 aaactacattgcatctaaataggattaagatgactt----gtgatttacttgaagaaattaggacgattttcgagcaaatgaggtttgggtgattttgga 41957908  T
Q  101 ttgaaaatgaaaatgttttgcatgtaccactgtaaccagaaaatggaagtttctgcgttcatatcatatacattaaaacgacagttaactaccgctgagt 200  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||| |||||| |||||||||||| |||||||||||    
T  41957907 ttgaaaatgaaaatgttttgcatgtaacactgtaaccagaaaatggaggtttatgcgttcatatcataaacattagaacgacagttaagtaccgctgagt 41957808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 46 - 198
Target Start/End: Complemental strand, 45414524 - 45414372
Alignment:
Q  46 ttacttgaagaaattaggatgattttcgagcaaatgaggtttgggtgattttggattgaaaatgaaaatgttttgcatgtaccactgtaaccagaaaatg 145  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||    
T  45414524 ttacttgaagaaataaggatgattttcgagcaaatgagatttgggtgattttagattgaaaatgaaagtgttttgcatgtaacactgtaaccagaaaatg 45414425  T
Q  146 gaagtttctgcgttcatatcatatacattaaaacgacagttaactaccgctga 198  Q
    || |||||| ||||||||||||| |||||  |||| ||||||| |||||||||    
T  45414424 gaggtttctacgttcatatcataaacattgcaacggcagttaattaccgctga 45414372  T

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Target: chr7; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 99 - 203
Target Start/End: Complemental strand, 10552912 - 10552808
Alignment:
Q  99 gattgaaaatgaaaatgttttgcatgtaccactgtaaccagaaaatggaagtttctgcgttcatatcatatacattaaaacgacagttaactaccgctga 198  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||  |||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  10552912 gattgaaaatgaaaatgttttgcatgtaacactataaccagaaaatggtggtttctgcgttcatatcataaacattagaacgacagttaactaccgctga 10552813  T
Q  199 gtgtc 203  Q
    |||||    
T  10552812 gtgtc 10552808  T

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Target: chr7; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 4 - 105
Target Start/End: Original strand, 2393270 - 2393371
Alignment:
Q  4 ctacattgcatgtaaataggattaagatgacttacttgtgatttacttgaagaaattaggatgattttcgagcaaatgaggtttgggtgattttggattg 103  Q
    |||||||||||||||||||||  || ||||||||||||||||||||||||| ||||||| |||||||| | ||||||||||||||||||||||| |||||    
T  2393270 ctacattgcatgtaaataggaagaaaatgacttacttgtgatttacttgaacaaattagcatgatttttgtgcaaatgaggtttgggtgatttttgattg 2393369  T
Q  104 aa 105  Q
    ||    
T  2393370 aa 2393371  T

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Target: chr7; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 4 - 102
Target Start/End: Original strand, 11409465 - 11409563
Alignment:
Q  4 ctacattgcatgtaaataggattaagatgacttacttgtgatttacttgaagaaattaggatgattttcgagcaaatgaggtttgggtgattttggatt 102  Q
    ||||||||||||||||| | |  || |  ||||||||||||||||||||||||| ||||||||||||||| |||| | | | |||||||||||||||||    
T  11409465 ctacattgcatgtaaatcgaaagaaaagaacttacttgtgatttacttgaagaagttaggatgattttcgtgcaatttaagattgggtgattttggatt 11409563  T

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Target: chr7; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 4 - 99
Target Start/End: Complemental strand, 31592643 - 31592547
Alignment:
Q  4 ctacattgcatgtaaataggattaagatgacttacttgtgatttacttgaagaaattaggatgattttcgagcaaatg-aggtttgggtgattttgg 99  Q
    |||||||||||||||||||||  ||    ||||||||||||||||||||||| || | |||||||||||| ||||||| |||||||||||| |||||    
T  31592643 ctacattgcatgtaaataggaagaaaggtacttacttgtgatttacttgaagcaaattggatgattttcgtgcaaatgaaggtttgggtgaatttgg 31592547  T

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Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 99
Target Start/End: Original strand, 17733846 - 17733942
Alignment:
Q  4 ctacattgcatgtaaataggattaagatgacttacttgtgatttacttgaagaaattaggatgattttcgagcaaatg-aggtttgggtgattttgg 99  Q
    |||||||||||||||||||||  ||    ||||||||||||||||||||||| || | |||||||||||| ||||||| | |||||||||| |||||    
T  17733846 ctacattgcatgtaaataggaagaaaggtacttacttgtgatttacttgaagcaaattggatgattttcgtgcaaatgaaagtttgggtgaatttgg 17733942  T

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Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 13953239 - 13953431
Alignment:
Q  1 aaactacattgcatgtaaataggattaagatgacttacttgtgatttacttgaagaaattaggatgattttcgagcaaa-tgaggtttgggtgattttgg 99  Q
    |||||||||||| |||||||| ||  || || |||||||||||| ||| |||| |||||| |  ||||||||||||||| ||| ||||||||||||||      
T  13953239 aaactacattgcttgtaaatatgaagaatataacttacttgtgaattaattgatgaaatttgattgattttcgagcaaattgaagtttgggtgatttttt 13953338  T
Q  100 attgaaaatgaaaatgttttgcatgtaccactgtaaccagaaaatggaagtttctgcgttcatatcatatacattaaaacgacagttaactaccg 194  Q
     || | | |  | | |||||||||||   | ||||||||||||||||| |||| ||| ||||||||||| |||||  || | |||||||||||||    
T  13953339 gtt-atagtttagaagttttgcatgt-gtattgtaaccagaaaatggaggtttatgctttcatatcataaacattgcaagggcagttaactaccg 13953431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 133 - 199
Target Start/End: Original strand, 13953995 - 13954061
Alignment:
Q  133 taaccagaaaatggaagtttctgcgttcatatcatatacattaaaacgacagttaactaccgctgag 199  Q
    ||||||||||||||| |||||||  ||||||||||| |||||  |||| ||||||||||||||||||    
T  13953995 taaccagaaaatggaggtttctgttttcatatcataaacattgcaacggcagttaactaccgctgag 13954061  T

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Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 28510546 - 28510594
Alignment:
Q  4 ctacattgcatgtaaataggattaagatgacttacttgtgatttacttg 52  Q
    |||||||||||||||||||||  || |||||||||||| ||||||||||    
T  28510546 ctacattgcatgtaaataggaagaaaatgacttacttgagatttacttg 28510594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 45414558 - 45414518
Alignment:
Q  1 aaactacattgcatgtaaataggattaagatgacttacttg 41  Q
    |||||||||||| |||||||| |||||||||||||||||||    
T  45414558 aaactacattgcgtgtaaataagattaagatgacttacttg 45414518  T

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Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 52560579 - 52560396
Alignment:
Q  18 aataggattaagatgacttacttgtgatttacttgaagaaattaggatgattttcgagcaaatgaggtttgggtgattttggattgaaaatgaaaatgtt 117  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52560579 aataggattaagatgacttacttgtgatttacttgatgaaattaggatgattttcgagcaaatgaggtttgggtgattttggattgaaaatgaaaatgtt 52560480  T
Q  118 ttgcatgtaccactgtaaccagaaaatggaagtttctgcgttcatatcatatacattaaaacgacagttaactaccgctgagtg 201  Q
    ||||||||| || | ||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||| ||||||    
T  52560479 ttgcatgtaacattataaccagaaaatggaggtttctgcgttcatatcatataaattagaacgacagttaactaccgttgagtg 52560396  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 18946310 - 18946405
Alignment:
Q  1 aaactacattgcatgtaaataggattaagatgacttacttgtgatttacttgaagaaattaggatgattttcgagcaaa-tgaggtttgggtgatt 95  Q
    ||||||||||||||||||||||||   | || |||||||||||| ||| |||| |||||| | |||||||||||||||| ||| ||||||||||||    
T  18946310 aaactacattgcatgtaaataggaaggaaataacttacttgtgaattaattgatgaaatttgaatgattttcgagcaaattgaagtttgggtgatt 18946405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 45031768 - 45031673
Alignment:
Q  1 aaactacattgcatgtaaataggattaagatgacttacttgtgatttacttgaagaaattaggatgattttcgagcaaa-tgaggtttgggtgatt 95  Q
    ||||||||||||||||||| ||||   | || |||||||||||| ||| |||| |||||| | |||||||||||||||| ||| ||||||||||||    
T  45031768 aaactacattgcatgtaaacaggaaggaaataacttacttgtgaattaattgatgaaatttgaatgattttcgagcaaattgaagtttgggtgatt 45031673  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 4 - 102
Target Start/End: Original strand, 53562277 - 53562375
Alignment:
Q  4 ctacattgcatgtaaataggattaagatgacttacttgtgatttacttgaagaaattaggatgattttcgagcaaatga-ggtttgggtgattttggatt 102  Q
    |||||||||||||||||||||  ||    |||||||||| |||||||||||| || | |||||||||||| | |||||| ||||||||||||||||||||    
T  53562277 ctacattgcatgtaaataggaagaaaggtacttacttgt-atttacttgaagcaaattggatgattttcgtgtaaatgaaggtttgggtgattttggatt 53562375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 4950674 - 4950752
Alignment:
Q  1 aaactacattgcatgtaaataggattaagatgacttacttgtgatttacttgaagaaattaggatgattttcgagcaaa 79  Q
    ||||||| |||||||||||||| |  || || ||||||||||||||||||||||| || | |||||||||||| |||||    
T  4950674 aaactaccttgcatgtaaatagaaagaaaataacttacttgtgatttacttgaagcaaattggatgattttcgtgcaaa 4950752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 98
Target Start/End: Complemental strand, 18879017 - 18878953
Alignment:
Q  35 ttacttgtgatttacttgaagaaattaggatgattttcgagcaaatg-aggtttgggtgattttg 98  Q
    ||||||||||||||||||||| || | |||| ||||||| ||||||| |||||||||||| ||||    
T  18879017 ttacttgtgatttacttgaagcaaattggataattttcgtgcaaatgaaggtttgggtgaatttg 18878953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 97
Target Start/End: Original strand, 37222576 - 37222670
Alignment:
Q  4 ctacattgcatgtaaataggattaagatgacttacttgtgatttacttgaagaaattaggatgattttcgagcaaa-tgaggtttgggtgatttt 97  Q
    |||||||||||||||||| ||  ||    |||| ||||| | ||| |||| |||||| |||||||||||||||||| ||| ||||||||||||||    
T  37222576 ctacattgcatgtaaataagaagaaaggtactttcttgtaaattaattgatgaaatttggatgattttcgagcaaattgaagtttgggtgatttt 37222670  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 97
Target Start/End: Complemental strand, 47867838 - 47867744
Alignment:
Q  4 ctacattgcatgtaaataggattaagatgacttacttgtgatttacttgaagaaattaggatgattttcgagcaaa-tgaggtttgggtgatttt 97  Q
    |||||||||||||||||| ||  ||    ||||||  |||| ||| |||| |||||| |||||||||||||||||| ||| ||||||||||||||    
T  47867838 ctacattgcatgtaaataagaagaaaggtacttaccagtgaattaattgatgaaatttggatgattttcgagcaaattgaagtttgggtgatttt 47867744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0916 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: scaffold0916
Description:

Target: scaffold0916; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 4 - 188
Target Start/End: Complemental strand, 523 - 338
Alignment:
Q  4 ctacattgcatgtaaataggattaagatgacttacttgtgatttacttgaagaaattaggatgattttcgagcaaatgaggtttgggtgattttggattg 103  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  523 ctacattgcatgtaaataggattaagatgacttacttgtgacttacttgaagaaattaggatgattttcaagcaaatgaggattgggtgattttggattg 424  T
Q  104 aaaatgaaaatgttttgcatgtacc--actgtaaccagaaaatggaagtttctgcgttcatatcatatacattaaaacgacagttaa 188  Q
    |||||| || ||||||||||||| |  ||| ||||| || | ||| ||||||||| ||||||||||| |||||  |||| |||||||    
T  423 aaaatggaagtgttttgcatgtaacgtactataacccgatactgg-agtttctgcattcatatcataaacattgcaacggcagttaa 338  T

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Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 13706399 - 13706297
Alignment:
Q  1 aaactacattgcatgtaaataggattaagatgacttacttgtgatttacttgaag-aaattaggatgattttcgagcaaatg-aggtttgggtgattttg 98  Q
    |||||||||||||||||||||| |  || || |||||||| |||||||||||||| ||||||| |||||||||| ||||||| |||||||| ||||||||    
T  13706399 aaactacattgcatgtaaatagaaacaaaataacttacttatgatttacttgaagcaaattag-atgattttcgtgcaaatgaaggtttggatgattttg 13706301  T
Q  99 gatt 102  Q
    ||||    
T  13706300 gatt 13706297  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 4 - 99
Target Start/End: Complemental strand, 18239753 - 18239657
Alignment:
Q  4 ctacattgcatgtaaataggattaagatgacttacttgtgatttacttgaagaaattaggatgattttcgagcaaatg-aggtttgggtgattttgg 99  Q
    |||||||||| ||||||||||| ||    ||||||||||||||||||||||| || | |||||||||||| ||||||| |||||||||||| |||||    
T  18239753 ctacattgcaagtaaataggatgaaaggtacttacttgtgatttacttgaagcaaattggatgattttcgtgcaaatgaaggtttgggtgaatttgg 18239657  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 4 - 118
Target Start/End: Original strand, 46200953 - 46201068
Alignment:
Q  4 ctacattgcatgtaaataggattaagatgacttacttgtgatttacttgaagaaattaggatgattttcgagcaaatg-aggtttgggtgattttggatt 102  Q
    |||||||||||||||||||||  ||    ||||||||||||||||||||| | || | |||||||||||| ||||||| |||||| ||||| ||| ||||    
T  46200953 ctacattgcatgtaaataggaagaaaggtacttacttgtgatttacttgaggcaaattggatgattttcgtgcaaatgaaggttttggtgaattttgatt 46201052  T
Q  103 gaaaatgaaaatgttt 118  Q
     ||| |||||||||||    
T  46201053 aaaattgaaaatgttt 46201068  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 31385618 - 31385562
Alignment:
Q  4 ctacattgcatgtaaataggattaagatgacttacttgtgatttacttgaagaaatt 60  Q
    |||||||||||||||||||||  || || |||||||||| | |||||||||||||||    
T  31385618 ctacattgcatgtaaataggaagaaaataacttacttgttaattacttgaagaaatt 31385562  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 42465115 - 42465171
Alignment:
Q  4 ctacattgcatgtaaataggattaagatgacttacttgtgatttacttgaagaaatt 60  Q
    ||||||| |||||||||||||  || || |||||||||| | |||||||||||||||    
T  42465115 ctacatttcatgtaaataggaagaaaataacttacttgttaattacttgaagaaatt 42465171  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 34457248 - 34457167
Alignment:
Q  1 aaactacattgcatgtaaataggattaagatgacttacttgtgatttacttgaagaaattaggatgattttcgagcaaatga 82  Q
    |||||||||||||||||||||| |  || || ||||||||||||||||||||||| || | |||||||||||| ||||||||    
T  34457248 aaactacattgcatgtaaatagaaagaaaataacttacttgtgatttacttgaagcaaattggatgattttcgtgcaaatga 34457167  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 19508108 - 19508015
Alignment:
Q  5 tacattgcatgtaaataggattaagatgacttacttgtgatttacttgaagaaattaggatgattttcgagcaaa-tgaggtttgggtgatttt 97  Q
    ||||||||||||||||||||   | |  |||||||||||| ||| |||| |||||| |||||||||||||||||| ||| ||||||||||||||    
T  19508108 tacattgcatgtaaataggaaggaaagaacttacttgtgaattaattgatgaaatttggatgattttcgagcaaattgaagtttgggtgatttt 19508015  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 4 - 102
Target Start/End: Original strand, 2121061 - 2121160
Alignment:
Q  4 ctacattgcatgtaaataggattaagatgacttacttgtgatttacttgaagaaattaggatgattttcgagcaaatg-aggtttgggtgattttggatt 102  Q
    |||||||||||||||||||||  ||    ||||||||||||||| ||||||| || | |||||||||||| ||||||| |||||||| ||||||| ||||    
T  2121061 ctacattgcatgtaaataggaagaaatatacttacttgtgatttccttgaagcaaattggatgattttcgtgcaaatgaaggtttggatgattttagatt 2121160  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 26170697 - 26170621
Alignment:
Q  4 ctacattgcatgtaaataggattaagatgacttacttgtgatttacttgaagaaattaggatgattttcgagcaaat 80  Q
    |||||||||||||||||| ||  || |  |||||||||||| ||| |||| |||||| |||||||||||||||||||    
T  26170697 ctacattgcatgtaaataagaagaaaagaacttacttgtgagttaattgatgaaatttggatgattttcgagcaaat 26170621  T

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Target: scaffold0251 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 4 - 99
Target Start/End: Original strand, 1832 - 1928
Alignment:
Q  4 ctacattgcatgtaaataggattaagatgacttacttgtgatttacttgaagaaattaggatgattttcgagcaaatg-aggtttgggtgattttgg 99  Q
    |||||||||||||||||||||  ||    ||||||||||||||||||||||| || | |||||||||||| ||||||| |||||||||||| |||||    
T  1832 ctacattgcatgtaaataggaagaaaggtacttacttgtgatttacttgaagcaaattggatgattttcgtgcaaatgaaggtttgggtgaatttgg 1928  T

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Target: scaffold0184 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 4 - 102
Target Start/End: Original strand, 28424 - 28523
Alignment:
Q  4 ctacattgcatgtaaataggattaagatgacttacttgtgatttacttgaagaaattaggatgattttcgagcaaatg-aggtttgggtgattttggatt 102  Q
    |||||||||||||||||||||  ||    |||||||||||||||| |||||| || | |||||||||||| | ||||| |||||||||||||||||||||    
T  28424 ctacattgcatgtaaataggaagaaaggtacttacttgtgatttagttgaagcaaattggatgattttcgtggaaatgaaggtttgggtgattttggatt 28523  T

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Target: scaffold0078 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 4 - 102
Target Start/End: Complemental strand, 44420 - 44321
Alignment:
Q  4 ctacattgcatgtaaataggattaagatgacttacttgtgatttacttgaagaaattaggatgattttcgagcaaatg-aggtttgggtgattttggatt 102  Q
    |||||||||||||||||||||  ||    |||||||||||||||| |||||| || | |||||||||||| | ||||| |||||||||||||||||||||    
T  44420 ctacattgcatgtaaataggaagaaaggtacttacttgtgatttagttgaagcaaattggatgattttcgtggaaatgaaggtttgggtgattttggatt 44321  T

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Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 4 - 102
Target Start/End: Original strand, 20495310 - 20495409
Alignment:
Q  4 ctacattgcatgtaaataggattaagatgacttacttgtgatttacttgaagaaattaggatgattttcgagcaaatg-aggtttgggtgattttggatt 102  Q
    |||||||||||||||||||||  ||    |||||||||||||||| |||||  || | |||||||||||| ||||||| |||||||||||||||||||||    
T  20495310 ctacattgcatgtaaataggaggaaaggtacttacttgtgatttagttgaatcaaattggatgattttcgtgcaaatgaaggtttgggtgattttggatt 20495409  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 97
Target Start/End: Complemental strand, 1550876 - 1550783
Alignment:
Q  4 ctacattgcatgtaaataggattaagatgacttacttgtgatttacttgaagaaattaggatgattttcgagcaaa-tgaggtttgggtgatttt 97  Q
    |||||||||||||||||||||  || || |||||||||||| ||| |||| |||||| |||||||||| ||||||| ||| ||||||||||||||    
T  1550876 ctacattgcatgtaaataggaagaaaataacttacttgtgaatta-ttgatgaaatttggatgattttggagcaaattgaagtttgggtgatttt 1550783  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 99
Target Start/End: Original strand, 21551528 - 21551617
Alignment:
Q  9 ttgcatgtaaataggattaagatgacttacttgtgatttacttgaagaaattaggatgattttcgagcaaatgaggtttgggtgattttgg 99  Q
    ||||||||||||||||  || |||||||| |||||||||||||||||||||||||||| || ||| |||||  | | ||||||||||||||    
T  21551528 ttgcatgtaaataggaagaaaatgactta-ttgtgatttacttgaagaaattaggatgcttgtcgtgcaaaatatgcttgggtgattttgg 21551617  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 99
Target Start/End: Original strand, 21552574 - 21552663
Alignment:
Q  9 ttgcatgtaaataggattaagatgacttacttgtgatttacttgaagaaattaggatgattttcgagcaaatgaggtttgggtgattttgg 99  Q
    ||||||||||||||||  || |||||||| |||||||||||||||||||||||||||| || ||| |||||  | | ||||||||||||||    
T  21552574 ttgcatgtaaataggaagaaaatgactta-ttgtgatttacttgaagaaattaggatgcttgtcgtgcaaaatatgcttgggtgattttgg 21552663  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 102
Target Start/End: Original strand, 23718482 - 23718581
Alignment:
Q  4 ctacattgcatgtaaataggattaagatgacttacttgtgatttacttgaag-aaattaggatgattttcgagcaaatg-aggtttgggtgattttggat 101  Q
    |||||||||||||||||||||  ||    ||||| ||||||||||||||||| |||||| ||||||||||| ||||||| |||||||||| | |||||||    
T  23718482 ctacattgcatgtaaataggaagaaaggtacttatttgtgatttacttgaagcaaatta-gatgattttcgtgcaaatgaaggtttgggtaaatttggat 23718580  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 391442 - 391510
Alignment:
Q  5 tacattgcatgtaaataggattaagatgacttacttgtgatttacttgaagaaattaggatgattttcg 73  Q
    ||||||| |||| ||||| |||| ||| |||||||| ||||||  ||||||||||| ||||||||||||    
T  391442 tacattgtatgttaatagcattaggattacttacttatgattttgttgaagaaatttggatgattttcg 391510  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 44119183 - 44119237
Alignment:
Q  4 ctacattgcatgtaaataggattaagatgacttacttgtgatttacttgaagaaa 58  Q
    |||||||||||||||||||||  || || |||||||||| | |||||||||||||    
T  44119183 ctacattgcatgtaaataggaagaaaataacttacttgttaattacttgaagaaa 44119237  T

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Target: scaffold1813 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold1813
Description:

Target: scaffold1813; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 631 - 733
Alignment:
Q  1 aaactacattgcatgtaaataggattaagatgacttacttgtgatttacttgaagaaattaggatgattttcgagcaaatg-aggtttgggtgattttgg 99  Q
    |||||||||||||||||||||| |  || || |||||||||| | |||||||||| || | |||||||||||| ||||||| ||||||| | ||||||||    
T  631 aaactacattgcatgtaaatagaaagaaaataacttacttgttaattacttgaagcaaattggatgattttcgtgcaaatgaaggtttgagggattttgg 730  T
Q  100 att 102  Q
    |||    
T  731 att 733  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 4 - 97
Target Start/End: Complemental strand, 7250340 - 7250246
Alignment:
Q  4 ctacattgcatgtaaataggattaa-gatgacttacttgtgatttacttgaagaaattaggatgattttcgagcaaa-tgaggtttgggtgatttt 97  Q
    |||||||||||||||||| ||  || ||| |||||||||||| ||| |||| |||||| |||||||||||||||||| ||| ||||||||||||||    
T  7250340 ctacattgcatgtaaataagaagaaagat-acttacttgtgaattaattgatgaaatttggatgattttcgagcaaattgaagtttgggtgatttt 7250246  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 10826837 - 10826893
Alignment:
Q  4 ctacattgcatgtaaataggattaagatgacttacttgtgatttacttgaagaaatt 60  Q
    |||||||||||||||||||||  || || |||||||||| | |||||||||||||||    
T  10826837 ctacattgcatgtaaataggaagaaaataacttacttgttaattacttgaagaaatt 10826893  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 23062492 - 23062433
Alignment:
Q  1 aaactacattgcatgtaaataggattaagatgacttacttgtgatttacttgaagaaatt 60  Q
    |||||||||||||||||||||| | ||| || |||||||||| | ||||||||| |||||    
T  23062492 aaactacattgcatgtaaatagaaataaaataacttacttgttaattacttgaacaaatt 23062433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 205
Target Start/End: Complemental strand, 34394117 - 34394089
Alignment:
Q  177 aacgacagttaactaccgctgagtgtcag 205  Q
    |||||||||||||||||||||||||||||    
T  34394117 aacgacagttaactaccgctgagtgtcag 34394089  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 97
Target Start/End: Original strand, 12028125 - 12028219
Alignment:
Q  4 ctacattgcatgtaaataggattaagatgacttacttgtgatttacttgaagaaattaggatgattttcgagcaaa-tgaggtttgggtgatttt 97  Q
    |||||||||||||||||| ||  ||    |||||||||||| ||| |||| |||||| |||||||||||||||||| ||| ||||||||||||||    
T  12028125 ctacattgcatgtaaataagaagaaaggtacttacttgtgaattaattgatgaaatttggatgattttcgagcaaattgaagtttgggtgatttt 12028219  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 99
Target Start/End: Original strand, 54603974 - 54604070
Alignment:
Q  4 ctacattgcatgtaaataggattaagatgacttacttgtgatttacttgaagaaattaggatgattttcgagcaaatg-aggtttgggtgattttgg 99  Q
    ||||||||| |||||||||||  ||    ||||||||||||||||||||||| || | |||||||||||| ||||||| | |||||||||| |||||    
T  54603974 ctacattgcttgtaaataggaagaaaggtacttacttgtgatttacttgaagcaaattggatgattttcgtgcaaatgaatgtttgggtgaatttgg 54604070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 31302560 - 31302501
Alignment:
Q  1 aaactacattgcatgtaaataggattaagatgacttacttgtgatttacttgaagaaatt 60  Q
    |||||||||||||||||||||| | ||| || |||||||||| | |||||||||||||||    
T  31302560 aaactacattgcatgtaaatagaaataaaataacttacttgttaattacttgaagaaatt 31302501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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