View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20598_high_41 (Length: 214)
Name: NF20598_high_41
Description: NF20598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20598_high_41 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 25138718 - 25138545
Alignment:
| Q |
18 |
atgaagtaaaagaacaaaatgtttatcttcaattccctttcttaaagtctgcgaaaggtgcaaatgtatgtggaaactttgtctcaatcctaaattgttg |
117 |
Q |
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| T |
25138718 |
atgaagtaaaagaacaaaatgtttatcttcaattccctttcttaaagtctgcgaaaggtgcaaatgtatgtggaaactttgtctcaatcctaaattgttg |
25138619 |
T |
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| Q |
118 |
tcttttgtagatgccaaaatataatagcatctttgaggggggcttcatctcttaattcccttttgtttaaaaacga |
193 |
Q |
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|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
25138618 |
tcttttgtagatgccaaa--ataatagcatctttgagaggggcttcatctcttaattcccttttgtttaaaaacga |
25138545 |
T |
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