View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20598_high_8 (Length: 462)
Name: NF20598_high_8
Description: NF20598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20598_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 4 - 348
Target Start/End: Complemental strand, 17771574 - 17771230
Alignment:
| Q |
4 |
actcttctttagtaacatttttctt-agtaacacttcaatttttgttacataaacaccaaaaagatcttgcaaagttgcaactatactnnnnnnnnnnnn |
102 |
Q |
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| T |
17771574 |
actcttctttagtaacacttttctttagtaacacttcaatttttgttacataaacaccaaaaagatcttgcaaagttgcaactatactaaaaaaacaaaa |
17771475 |
T |
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| Q |
103 |
ncatttatagcatgaaaattcaaaaggttgtattgaaaatgccaagttagatgctattatatgctttcataacttaccatttcttgactttatataatta |
202 |
Q |
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| T |
17771474 |
acatttatagcatgaaaattcaaaaggttgtattgaaaatgccaagttagatgctattatatgctttcataacttaccatttcttgactttatataatta |
17771375 |
T |
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| Q |
203 |
aatcagtatgagtcaataggacaaaaatcttctatttcaacctcagaatcaaccctttagattcctgtcacagaaaacaaaagatgattcaagaaactaa |
302 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
17771374 |
aatcc-tatgagtcaataggacaaaaatcttctatttcaacctcagaatcaaccctttagattcttgtcacagaaaacaaaagatgattcaagaaactaa |
17771276 |
T |
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| Q |
303 |
tgccaaaaatattgatgaggtcggtgcctatattgtctcattctaa |
348 |
Q |
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| T |
17771275 |
tgccaaaaatattgatgaggtcggtgcctatattgtctcattctaa |
17771230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 421 - 462
Target Start/End: Original strand, 17771097 - 17771138
Alignment:
| Q |
421 |
tcaagtggtagaatttgtttccctaactttaagggaaactaa |
462 |
Q |
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| T |
17771097 |
tcaagtggtagaatttgtttccctaactttaagggaaactaa |
17771138 |
T |
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