View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20598_low_11 (Length: 453)
Name: NF20598_low_11
Description: NF20598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20598_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 10 - 432
Target Start/End: Original strand, 21383994 - 21384420
Alignment:
| Q |
10 |
agatgaaggagttaaagaggacccttatattcaaaagtttacgatgaagatgtgcagtcaaatcatttgattttttaaaatgaaactggtt-taacctat |
108 |
Q |
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| T |
21383994 |
agatgagggagttaaagaggacccttatatccaaaagtttacgatgaagatatgcagtcaaatcatttgattttttagaatgaaactggttataacctat |
21384093 |
T |
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| Q |
109 |
aatcgggaggtaaataatgtctaatcaataattatttttgtcagagttcaaacttcagaaactctattcgaaatttaattaatca----cttgatatact |
204 |
Q |
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| T |
21384094 |
aatcaggaggtaaataacgtctaatcaataattgtttccgtcagagttcaaactttagaaactctattcaaaatttgattaatcaatcacttgatatact |
21384193 |
T |
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| Q |
205 |
ccattcacttgattaaattggtcaatttgttttaattagtaaaaaataattaagaaaataa-gatattttgtggaagaaaataatctagtttatattaca |
303 |
Q |
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| T |
21384194 |
c-attcacttgattaaattggtcaatttgttttaagtagtaaaatataattaagaaaataaagatattttgtggaagaaaataatctagtttatattaca |
21384292 |
T |
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| Q |
304 |
tgcacatatattgacagatcattataatataaaccattacatctcacttgaacttttaaagtagggtttcacatcaaaggagnnnnnnnncaccaaatcc |
403 |
Q |
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| T |
21384293 |
tggacatatattgacagatcattataatataaaccattacatctgacttgaacttttaaagtaggtttcaacatcaaaggag-aaaaaaacaccaaatcc |
21384391 |
T |
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| Q |
404 |
tatctaggagtttcaacggtgtaaaactt |
432 |
Q |
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| T |
21384392 |
tatctaggagtttcaacggtgtaaaactt |
21384420 |
T |
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