View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20598_low_12 (Length: 448)
Name: NF20598_low_12
Description: NF20598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20598_low_12 |
 | |
|
| [»] scaffold0029 (4 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 411; Significance: 0; HSPs: 23)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 19 - 441
Target Start/End: Original strand, 31252582 - 31253004
Alignment:
| Q |
19 |
aagctaagatagtatattttgattactacaacgatgccaagcgtttatatcaaacaccacaacagtatggtgtgtggagcaattattttctttccttgtt |
118 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31252582 |
aagctaagatagtatattttgattattacaacgatgccaagcgtttatatcaaacacctcaacagtatggtgtgtggagcaattattttctttccttgtt |
31252681 |
T |
|
| Q |
119 |
aactttttattgttttattcttatcaaatttgtttgatcccattcactaatttatgtacattaatgatgcaggttttatttccgataaggtcgagatttt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
31252682 |
aactttttattgttttattcttatcaaatttgtttgatcccattcactaatttatgtacattaatgatgcaggttttatttctgataaggtcgagatttt |
31252781 |
T |
|
| Q |
219 |
gaaagcatgttgtggaggaagtggaccatatcatcatgatgagtattggtgtggaacgccgaatacaacagtttgctctgatccttcaaaactaataaat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31252782 |
gaaagcatgttgtggaggaagtggaccatatcatcatgatgagtattggtgtggaacgccgaatacaacagtttgctctgatccttcaaaactaataaat |
31252881 |
T |
|
| Q |
319 |
tgggatggaccccattttaccgaagccgcttataagcaaatagctaaaggattaatcgaaggcccttttgcatatccttctctaaaacctgctcctttca |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31252882 |
tgggatggaccccattttaccgaagccgcttataagcaaatagctaaaggattaatcgaaggcccttttgcatatccttctctaaaacctgctcctttca |
31252981 |
T |
|
| Q |
419 |
agatagcttagaattgatgatgt |
441 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
31252982 |
agatagcttagaattgatgatgt |
31253004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 19 - 441
Target Start/End: Complemental strand, 13003004 - 13002582
Alignment:
| Q |
19 |
aagctaagatagtatattttgattactacaacgatgccaagcgtttatatcaaacaccacaacagtatggtgtgtggagcaattattttctttccttgtt |
118 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
13003004 |
aagctaagatagtatattttgattattacaacgatgccaagcgtttatatcaaacaccacaacaatatggtgtgtggagcaattattttctttccttgtt |
13002905 |
T |
|
| Q |
119 |
aactttttattgttttattcttatcaaatttgtttgatcccattcactaatttatgtacattaatgatgcaggttttatttccgataaggtcgagatttt |
218 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
13002904 |
aactttttattgtttaattcttatcaaatttgtttgatcccattcactaatttatgtacattaatgatgcaggttttatttctgataaggtcgagatttt |
13002805 |
T |
|
| Q |
219 |
gaaagcatgttgtggaggaagtggaccatatcatcatgatgagtattggtgtggaacgccgaatacaacagtttgctctgatccttcaaaactaataaat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13002804 |
gaaagcatgttgtggaggaagtggaccatatcatcatgatgagtattggtgtggaacgccgaatacaacagtttgctctgatccttcaaaactaataaat |
13002705 |
T |
|
| Q |
319 |
tgggatggaccccattttaccgaagccgcttataagcaaatagctaaaggattaatcgaaggcccttttgcatatccttctctaaaacctgctcctttca |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13002704 |
tgggatggaccccattttaccgaagccgcttataagcaaatagctaaaggattaatcgaaggcccttttgcatatccttctctaaaacctgctcctttca |
13002605 |
T |
|
| Q |
419 |
agatagcttagaattgatgatgt |
441 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
13002604 |
agatagcttagaattgatgatgt |
13002582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 19 - 441
Target Start/End: Complemental strand, 31093804 - 31093382
Alignment:
| Q |
19 |
aagctaagatagtatattttgattactacaacgatgccaagcgtttatatcaaacaccacaacagtatggtgtgtggagcaattattttctttccttgtt |
118 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||| |||||||||||| |||||||||| ||||||| ||||||| |||||||||||||| |||| |
|
|
| T |
31093804 |
aagctaagatagtatattttgactattacaacgatgccaaacgtttatatcaagcaccacaacaatatggtgcgtggagccattattttctttccatgtt |
31093705 |
T |
|
| Q |
119 |
aactttttattgttttattcttatcaaatttgtttgatcccattcactaatttatgtacattaatgatgcaggttttatttccgataaggtcgagatttt |
218 |
Q |
| |
|
|| |||| |||| ||||| |||||||||||| ||||||||||| ||||||||| ||| |||||||||||||||||||||||| ||||| ||||| ||||| |
|
|
| T |
31093704 |
aagttttcattgatttatacttatcaaatttatttgatcccatgcactaatttctgttcattaatgatgcaggttttatttctgataaagtcgaaatttt |
31093605 |
T |
|
| Q |
219 |
gaaagcatgttgtggaggaagtggaccatatcatcatgatgagtattggtgtggaacgccgaatacaacagtttgctctgatccttcaaaactaataaat |
318 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| || ||| ||||||||| ||||||||||| ||||||| ||||||||||||||| ||||| |
|
|
| T |
31093604 |
gaaagcatgttgcggaggaagtggaccatatcatcatgatcagaatttttgtggaacgtcgaatacaacaatttgctccgatccttcaaaactattaaat |
31093505 |
T |
|
| Q |
319 |
tgggatggaccccattttaccgaagccgcttataagcaaatagctaaaggattaatcgaaggcccttttgcatatccttctctaaaacctgctcctttca |
418 |
Q |
| |
|
|||||||| | || ||||||||||||||||||||||| ||||||||| | ||| | |||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
31093504 |
tgggatggtcaacactttaccgaagccgcttataagcatatagctaaatgtttagtggaaggctcttttgcatatccttctctaaaacctgctcctttca |
31093405 |
T |
|
| Q |
419 |
agatagcttagaattgatgatgt |
441 |
Q |
| |
|
|||||||||||||| |||||||| |
|
|
| T |
31093404 |
agatagcttagaatcgatgatgt |
31093382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 440
Target Start/End: Original strand, 16163272 - 16163695
Alignment:
| Q |
19 |
aagctaagatagtatattttgattactacaacgatgccaagcgtttatatcaaacaccacaacagtatggtgtgtggagcaattattttctttccttgtt |
118 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||| ||||||||| || |||||||||| |||||| ||||||||||||||||| ||||||||| |
|
|
| T |
16163272 |
aagctaagataatatattttgactactacaacgatgccaaacgtttatatgaagcaccacaacaatatggtctgtggagcaattattttacttccttgtt |
16163371 |
T |
|
| Q |
119 |
aactttttattgttttattcttatcaaatttgtttgatcccat--tcactaatttatgtacattaatgatgcaggttttatttccgataaggtcgagatt |
216 |
Q |
| |
|
|| ||| ||| ||||||||| ||||||| ||||||||||| |||||| ||||||| ||||||||||| ||| |||| ||| |||||||||||| || |
|
|
| T |
16163372 |
aagtttacatttatttattcttgacaaatttatttgatcccatcctcactagtttatgtgcattaatgatgtaggctttacttctgataaggtcgaggtt |
16163471 |
T |
|
| Q |
217 |
ttgaaagcatgttgtggaggaagtggaccatatcatcatgatgagtattggtgtggaacgccgaatacaacagtttgctctgatccttcaaaactaataa |
316 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| || | ||| | |||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
16163472 |
ttgaaagcatgttgtggaggaattggaccataccaccgtgacgctaattggtgtggaatgcctggtacaacagtttgctctgatccttcaaaactaataa |
16163571 |
T |
|
| Q |
317 |
attgggatggaccccattttaccgaagccgcttataagcaaatagctaaaggattaatcgaaggcccttttgcatatccttctctaaaacctgctccttt |
416 |
Q |
| |
|
||| |||||||| || || |||||||| || |||||||||||||| ||||| ||||| ||||| |||||||| |||| || |||||||||||| |||| |
|
|
| T |
16163572 |
attttgatggacctcacttaaccgaagcagcatataagcaaatagccaaaggtttaattgaaggttcttttgcaaatccatccctaaaacctgctgcttt |
16163671 |
T |
|
| Q |
417 |
caagatagcttagaattgatgatg |
440 |
Q |
| |
|
|||||||| |||||||||||||| |
|
|
| T |
16163672 |
caagatagtctagaattgatgatg |
16163695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 19 - 440
Target Start/End: Original strand, 27206611 - 27207023
Alignment:
| Q |
19 |
aagctaagatagtatattttgattactacaacgatgccaagcgtttatatcaaacaccacaacagtatggtgtgtggagcaattattttctttccttgtt |
118 |
Q |
| |
|
|||||||||||||||| ||||| ||||| |||| ||| |||||||| ||| ||||| |||| ||||| ||||||||||||||||||||||||| ||| |
|
|
| T |
27206611 |
aagctaagatagtatactttgacgtttacaatgatgtcaaacgtttataccaagcaccagaacaatatgg-gtgtggagcaattattttctttcctggtt |
27206709 |
T |
|
| Q |
119 |
aactttttattgttttattcttatcaaatttgtttgatcccattcactaatttatgtacattaatgatgcaggttttatttccgataaggtcgagatttt |
218 |
Q |
| |
|
|| |||| | ||||||| |||||||| |||| | |||| |||||| || || || ||| |||||||||||| || ||||| ||||||||||| |
|
|
| T |
27206710 |
tac-----attgatctattcttgtcaaatttatttgtttccatgcactaactt---tatatcaataatgcaggttttactttggataacgtcgagatttt |
27206801 |
T |
|
| Q |
219 |
gaaagcatgttgtggaggaagtggaccatatcatcatgatgagtattggtgtggaacgccgaatacaacagtttgctctgatccttcaaaactaataaat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| |||||| || |||||| || || ||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
27206802 |
gaaagcatgttgtggaggaagtggaccataccattttgatgatcttttttgtggatggcagagtacaacaatttgctctgatccttcgaaactaataaat |
27206901 |
T |
|
| Q |
319 |
tgggatggaccccattttaccgaagccgcttataagcaaatagctaaaggattaatcgaaggcccttttgcatatccttctctaaaacctgctcctttca |
418 |
Q |
| |
|
||||||||||| || ||||| ||||| ||| |||| |||||| ||||||| ||||||||||||| ||||||| |||||||||||||||| |||||||||| |
|
|
| T |
27206902 |
tgggatggaccgcactttactgaagcagctcataaacaaataactaaaggtttaatcgaaggccattttgcaaatccttctctaaaacccgctcctttca |
27207001 |
T |
|
| Q |
419 |
agatagcttagaattgatgatg |
440 |
Q |
| |
|
|||||| ||||||||||||||| |
|
|
| T |
27207002 |
agatagtttagaattgatgatg |
27207023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 169 - 248
Target Start/End: Original strand, 25658831 - 25658910
Alignment:
| Q |
169 |
tttatgtacattaatgatgcaggttttatttccgataaggtcgagattttgaaagcatgttgtggaggaagtggaccata |
248 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25658831 |
tttatgtaaattaatgatgcaggttttatttctgataaggaagagattttgaaagcatgttgtggaggaagtggaccata |
25658910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 169 - 248
Target Start/End: Original strand, 25665236 - 25665315
Alignment:
| Q |
169 |
tttatgtacattaatgatgcaggttttatttccgataaggtcgagattttgaaagcatgttgtggaggaagtggaccata |
248 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25665236 |
tttatgtaaattaatgatgcaggttttatttctgataaggaagagattttgaaagcatgttgtggaggaagtggaccata |
25665315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 169 - 248
Target Start/End: Original strand, 25671641 - 25671720
Alignment:
| Q |
169 |
tttatgtacattaatgatgcaggttttatttccgataaggtcgagattttgaaagcatgttgtggaggaagtggaccata |
248 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25671641 |
tttatgtaaattaatgatgcaggttttatttctgataaggaagagattttgaaagcatgttgtggaggaagtggaccata |
25671720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 169 - 248
Target Start/End: Original strand, 25678046 - 25678125
Alignment:
| Q |
169 |
tttatgtacattaatgatgcaggttttatttccgataaggtcgagattttgaaagcatgttgtggaggaagtggaccata |
248 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25678046 |
tttatgtaaattaatgatgcaggttttatttctgataaggaagagattttgaaagcatgttgtggaggaagtggaccata |
25678125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 169 - 248
Target Start/End: Original strand, 25684722 - 25684801
Alignment:
| Q |
169 |
tttatgtacattaatgatgcaggttttatttccgataaggtcgagattttgaaagcatgttgtggaggaagtggaccata |
248 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25684722 |
tttatgtaaattaatgatgcaggttttatttctgataaggaagagattttgaaagcatgttgtggaggaagtggaccata |
25684801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 25658688 - 25658762
Alignment:
| Q |
19 |
aagctaagatagtatattttgattactacaacgatgccaagcgtttatatcaaacaccacaacagtatggtgtgt |
93 |
Q |
| |
|
||||||||||| |||||||||| ||||||||| || ||| |||||||||||||||||||| || |||||||||| |
|
|
| T |
25658688 |
aagctaagataatatattttgactactacaacaatctcaaacgtttatatcaaacaccacagcaatatggtgtgt |
25658762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 25665093 - 25665167
Alignment:
| Q |
19 |
aagctaagatagtatattttgattactacaacgatgccaagcgtttatatcaaacaccacaacagtatggtgtgt |
93 |
Q |
| |
|
||||||||||| |||||||||| ||||||||| || ||| |||||||||||||||||||| || |||||||||| |
|
|
| T |
25665093 |
aagctaagataatatattttgactactacaacaatctcaaacgtttatatcaaacaccacagcaatatggtgtgt |
25665167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 25671498 - 25671572
Alignment:
| Q |
19 |
aagctaagatagtatattttgattactacaacgatgccaagcgtttatatcaaacaccacaacagtatggtgtgt |
93 |
Q |
| |
|
||||||||||| |||||||||| ||||||||| || ||| |||||||||||||||||||| || |||||||||| |
|
|
| T |
25671498 |
aagctaagataatatattttgactactacaacaatctcaaacgtttatatcaaacaccacagcaatatggtgtgt |
25671572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 25677903 - 25677977
Alignment:
| Q |
19 |
aagctaagatagtatattttgattactacaacgatgccaagcgtttatatcaaacaccacaacagtatggtgtgt |
93 |
Q |
| |
|
||||||||||| |||||||||| ||||||||| || ||| |||||||||||||||||||| || |||||||||| |
|
|
| T |
25677903 |
aagctaagataatatattttgactactacaacaatctcaaacgtttatatcaaacaccacagcaatatggtgtgt |
25677977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 25684579 - 25684653
Alignment:
| Q |
19 |
aagctaagatagtatattttgattactacaacgatgccaagcgtttatatcaaacaccacaacagtatggtgtgt |
93 |
Q |
| |
|
||||||||||| |||||||||| ||||||||| || ||| |||||||||||||||||||| || |||||||||| |
|
|
| T |
25684579 |
aagctaagataatatattttgactactacaacaatctcaaacgtttatatcaaacaccacagcaatatggtgtgt |
25684653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 169 - 238
Target Start/End: Original strand, 27229419 - 27229488
Alignment:
| Q |
169 |
tttatgtacattaatgatgcaggttttatttccgataaggtcgagattttgaaagcatgttgtggaggaa |
238 |
Q |
| |
|
||||||||||||||| ||||||| |||| ||| ||||||||| ||||| || |||||||||||||||||| |
|
|
| T |
27229419 |
tttatgtacattaatcatgcaggctttacttctgataaggtcaagattatgcaagcatgttgtggaggaa |
27229488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 434
Target Start/End: Original strand, 25658949 - 25659099
Alignment:
| Q |
284 |
caacagtttgctctgatccttcaaaactaataaattgggatggaccccattttaccgaagccgcttataagcaaatagctaaaggattaatcgaaggccc |
383 |
Q |
| |
|
||||||||||| | || ||||||||| |||||||||||||| | || || || ||||| | |||||| |||||| || ||| || | |||||||| |
|
|
| T |
25658949 |
caacagtttgccccgacccttcaaaatatataaattgggatggctcacacttaactgaagcatcatataagttaatagcaaagggactagttgaaggccc |
25659048 |
T |
|
| Q |
384 |
ttttgcatatccttctctaaaacctgctcctttcaagatagcttagaattg |
434 |
Q |
| |
|
||||||| ||||||| || ||| || ||| |||||| |||||||||||||| |
|
|
| T |
25659049 |
ttttgcaaatccttcccttaaaactcctcttttcaatatagcttagaattg |
25659099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 434
Target Start/End: Original strand, 25665354 - 25665504
Alignment:
| Q |
284 |
caacagtttgctctgatccttcaaaactaataaattgggatggaccccattttaccgaagccgcttataagcaaatagctaaaggattaatcgaaggccc |
383 |
Q |
| |
|
||||||||||| | || ||||||||| |||||||||||||| | || || || ||||| | |||||| |||||| || ||| || | |||||||| |
|
|
| T |
25665354 |
caacagtttgccccgacccttcaaaatatataaattgggatggctcacacttaactgaagcatcatataagttaatagcaaagggactagttgaaggccc |
25665453 |
T |
|
| Q |
384 |
ttttgcatatccttctctaaaacctgctcctttcaagatagcttagaattg |
434 |
Q |
| |
|
||||||| ||||||| || ||| || ||| |||||| |||||||||||||| |
|
|
| T |
25665454 |
ttttgcaaatccttcccttaaaactcctcttttcaatatagcttagaattg |
25665504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 434
Target Start/End: Original strand, 25671759 - 25671909
Alignment:
| Q |
284 |
caacagtttgctctgatccttcaaaactaataaattgggatggaccccattttaccgaagccgcttataagcaaatagctaaaggattaatcgaaggccc |
383 |
Q |
| |
|
||||||||||| | || ||||||||| |||||||||||||| | || || || ||||| | |||||| |||||| || ||| || | |||||||| |
|
|
| T |
25671759 |
caacagtttgccccgacccttcaaaatatataaattgggatggctcacacttaactgaagcatcatataagttaatagcaaagggactagttgaaggccc |
25671858 |
T |
|
| Q |
384 |
ttttgcatatccttctctaaaacctgctcctttcaagatagcttagaattg |
434 |
Q |
| |
|
||||||| ||||||| || ||| || ||| |||||| |||||||||||||| |
|
|
| T |
25671859 |
ttttgcaaatccttcccttaaaactcctcttttcaatatagcttagaattg |
25671909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 434
Target Start/End: Original strand, 25678164 - 25678314
Alignment:
| Q |
284 |
caacagtttgctctgatccttcaaaactaataaattgggatggaccccattttaccgaagccgcttataagcaaatagctaaaggattaatcgaaggccc |
383 |
Q |
| |
|
||||||||||| | || ||||||||| |||||||||||||| | || || || ||||| | |||||| |||||| || ||| || | |||||||| |
|
|
| T |
25678164 |
caacagtttgccccgacccttcaaaatatataaattgggatggctcacacttaactgaagcatcatataagttaatagcaaagggactagttgaaggccc |
25678263 |
T |
|
| Q |
384 |
ttttgcatatccttctctaaaacctgctcctttcaagatagcttagaattg |
434 |
Q |
| |
|
||||||| ||||||| || ||| || ||| |||||| |||||||||||||| |
|
|
| T |
25678264 |
ttttgcaaatccttcccttaaaactcctcttttcaatatagcttagaattg |
25678314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 434
Target Start/End: Original strand, 25684840 - 25684990
Alignment:
| Q |
284 |
caacagtttgctctgatccttcaaaactaataaattgggatggaccccattttaccgaagccgcttataagcaaatagctaaaggattaatcgaaggccc |
383 |
Q |
| |
|
||||||||||| | || ||||||||| |||||||||||||| | || || || ||||| | |||||| |||||| || ||| || | |||||||| |
|
|
| T |
25684840 |
caacagtttgccccgacccttcaaaatatataaattgggatggctcacacttaactgaagcatcatataagttaatagcaaagggactagttgaaggccc |
25684939 |
T |
|
| Q |
384 |
ttttgcatatccttctctaaaacctgctcctttcaagatagcttagaattg |
434 |
Q |
| |
|
||||||| ||||||| || ||| || ||| |||||| |||||||||||||| |
|
|
| T |
25684940 |
ttttgcaaatccttcccttaaaactcctcttttcaatatagcttagaattg |
25684990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 307 - 367
Target Start/End: Original strand, 27229557 - 27229617
Alignment:
| Q |
307 |
aaactaataaattgggatggaccccattttaccgaagccgcttataagcaaatagctaaag |
367 |
Q |
| |
|
||| ||||||||| ||||||| |||| ||||||||||| ||| ||||||||||||| |||| |
|
|
| T |
27229557 |
aaattaataaattaggatggatcccactttaccgaagcagctcataagcaaatagcaaaag |
27229617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 27229269 - 27229361
Alignment:
| Q |
19 |
aagctaagatagtatattttgattactacaacgatgccaagcgtttatatcaaacaccacaacagtatggtgtgtggagcaattattttcttt |
111 |
Q |
| |
|
|||||| |||| |||| ||||| ||||||| || ||| |||||||||||| |||||||||| |||| | || |||| ||||||||||||| |
|
|
| T |
27229269 |
aagctaggataatatactttgaccactacaatattgtcaaacgtttatatcaatcaccacaacaatatgatatgcggagtaattattttcttt |
27229361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029 (Bit Score: 49; Significance: 7e-19; HSPs: 4)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 286 - 430
Target Start/End: Complemental strand, 43186 - 43042
Alignment:
| Q |
286 |
acagtttgctctgatccttcaaaactaataaattgggatggaccccattttaccgaagccgcttataagcaaatagctaaaggattaatcgaaggccctt |
385 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| ||||| || ||||| ||||| |||||||||| |||||| ||||| || | || || || | |
|
|
| T |
43186 |
acagtttgctctgatccttcaaaacgtataaattgggacggaccacactttactgaagcagcttataagctaatagcaaaagggctagttgagggtccat |
43087 |
T |
|
| Q |
386 |
ttgcatatccttctctaaaacctgctcctttcaagatagcttaga |
430 |
Q |
| |
|
|| || |||||||||| ||| | ||| |||||| |||||||||| |
|
|
| T |
43086 |
tttcaaatccttctcttaaatcccctcttttcaaaatagcttaga |
43042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 286 - 368
Target Start/End: Complemental strand, 18174 - 18092
Alignment:
| Q |
286 |
acagtttgctctgatccttcaaaactaataaattgggatggaccccattttaccgaagccgcttataagcaaatagctaaagg |
368 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| ||||| || ||||| ||||| |||||||||| |||||| ||||| |
|
|
| T |
18174 |
acagtttgctctgatccttcaaaacgtataaattgggacggaccacactttactgaagcagcttataagctaatagcaaaagg |
18092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 90
Target Start/End: Complemental strand, 18431 - 18364
Alignment:
| Q |
23 |
taagatagtatattttgattactacaacgatgccaagcgtttatatcaaacaccacaacagtatggtg |
90 |
Q |
| |
|
||||||| |||| ||||| ||||| || |||||||| ||||||||||||||||| ||||| ||||||| |
|
|
| T |
18431 |
taagataatatactttgactactataatgatgccaaacgtttatatcaaacaccgcaacaatatggtg |
18364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 90
Target Start/End: Complemental strand, 43443 - 43376
Alignment:
| Q |
23 |
taagatagtatattttgattactacaacgatgccaagcgtttatatcaaacaccacaacagtatggtg |
90 |
Q |
| |
|
||||||| |||| ||||| ||||| || |||||||| |||||||||||||||| ||||| ||||||| |
|
|
| T |
43443 |
taagataatatactttgactactataatgatgccaaatgtttatatcaaacaccgcaacaatatggtg |
43376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 286 - 430
Target Start/End: Complemental strand, 33130162 - 33130018
Alignment:
| Q |
286 |
acagtttgctctgatccttcaaaactaataaattgggatggaccccattttaccgaagccgcttataagcaaatagctaaaggattaatcgaaggccctt |
385 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| ||||| || ||||| ||||| |||||||||| |||||| ||||| || | || || || | |
|
|
| T |
33130162 |
acagtttgctctgatccttcaaaacgtataaattgggacggacctcactttactgaagcagcttataagctaatagcaaaagggctagttgagggtccat |
33130063 |
T |
|
| Q |
386 |
ttgcatatccttctctaaaacctgctcctttcaagatagcttaga |
430 |
Q |
| |
|
|| || |||||||||| ||| | ||| |||||| |||||||||| |
|
|
| T |
33130062 |
tttcaaatccttctcttaaatcccctcttttcaaaatagcttaga |
33130018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 288 - 430
Target Start/End: Complemental strand, 33120417 - 33120275
Alignment:
| Q |
288 |
agtttgctctgatccttcaaaactaataaattgggatggaccccattttaccgaagccgcttataagcaaatagctaaaggattaatcgaaggccctttt |
387 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||| ||||| || ||||| ||||| |||||||||| |||||| ||||| || | || || || ||| |
|
|
| T |
33120417 |
agtttgctctgatccttcaaatcgtataaattgggacggacctcactttactgaagcagcttataagctaatagcaaaagggctagttgagggtccattt |
33120318 |
T |
|
| Q |
388 |
gcatatccttctctaaaacctgctcctttcaagatagcttaga |
430 |
Q |
| |
|
|| |||||||||| ||| | ||| |||||| |||||||||| |
|
|
| T |
33120317 |
tcaaatccttctcttaaatcccctcttttcaaaatagcttaga |
33120275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 283 - 396
Target Start/End: Original strand, 19113240 - 19113353
Alignment:
| Q |
283 |
acaacagtttgctctgatccttcaaaactaataaattgggatggaccccattttaccgaagccgcttataagcaaatagctaaaggattaatcgaaggcc |
382 |
Q |
| |
|
||||| |||||||| || ||||| ||| |||||||||||||||||||| |||| ||||| || |||| ||||||||| |||||| || | ||||| | |
|
|
| T |
19113240 |
acaactgtttgctccgacccttctaaatatataaattgggatggaccccaccttacagaagcagcatataggcaaatagcaaaaggactagttgaaggtc |
19113339 |
T |
|
| Q |
383 |
cttttgcatatcct |
396 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
19113340 |
cttttgcaaatcct |
19113353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 90
Target Start/End: Complemental strand, 33120676 - 33120609
Alignment:
| Q |
23 |
taagatagtatattttgattactacaacgatgccaagcgtttatatcaaacaccacaacagtatggtg |
90 |
Q |
| |
|
||||||| |||| ||||| ||||| || |||||||| ||||||||||||||||| ||||| ||||||| |
|
|
| T |
33120676 |
taagataatatactttgactactataatgatgccaaacgtttatatcaaacaccgcaacaatatggtg |
33120609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 90
Target Start/End: Complemental strand, 33130419 - 33130352
Alignment:
| Q |
23 |
taagatagtatattttgattactacaacgatgccaagcgtttatatcaaacaccacaacagtatggtg |
90 |
Q |
| |
|
||||||| |||| ||||| ||||| || |||||||| ||||||||||||||||| ||||| ||||||| |
|
|
| T |
33130419 |
taagataatatactttgactactataatgatgccaaacgtttatatcaaacaccgcaacaatatggtg |
33130352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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