View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20598_low_13 (Length: 423)

Name: NF20598_low_13
Description: NF20598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20598_low_13
NF20598_low_13
[»] chr1 (15 HSPs)
chr1 (140-408)||(12885314-12885582)
chr1 (147-408)||(12921792-12922053)
chr1 (140-408)||(12955999-12956268)
chr1 (140-389)||(12914491-12914740)
chr1 (140-382)||(12950243-12950485)
chr1 (140-382)||(12942585-12942827)
chr1 (140-389)||(12992219-12992468)
chr1 (11-70)||(12885647-12885706)
chr1 (149-339)||(12893672-12893862)
chr1 (201-337)||(12997910-12998045)
chr1 (11-70)||(12942465-12942524)
chr1 (11-70)||(12950123-12950182)
chr1 (303-406)||(13000911-13001015)
chr1 (24-70)||(12955895-12955941)
chr1 (16-70)||(12922143-12922197)
[»] chr8 (2 HSPs)
chr8 (171-256)||(14073726-14073811)
chr8 (171-219)||(14069378-14069426)


Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 140 - 408
Target Start/End: Complemental strand, 12885582 - 12885314
Alignment:
Q  140 ttttatttgtatttgcagagtgtaccaaaggagtttatgaaaaatagaagtcatgaaaatattgtggagttgaaaatgggaagaaagtcatggttcgtaa 239  Q
    |||| |||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  12885582 ttttgtttgtatttgcagagtgtaccaaaggagtttatgaaaaaaggaagtaatgaaaatattgtggagttgaaaatgggaagaaagtcatggttcgtaa 12885483  T
Q  240 aagtcaattattatgagagtgttcatggctggaggttcagtaaaggatggagaaaatttatggaagaatgcaaagtggagattggagatacttgtctctt 339  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12885482 aagtcaattattatgagagtgttcatggctggaggttcaataaaggatggagaaaatttatggaagaatgcaaagtggagattggagatacttgtctctt 12885383  T
Q  340 taatctaatcgatgagagaaaatttgtgtttgatgtttcaattataggaagaacccattagttgtttgt 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12885382 taatctaatcgatgagagaaaatttgtgtttgatgtttcaattataggaagaacccattagttgtttgt 12885314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 147 - 408
Target Start/End: Complemental strand, 12922053 - 12921792
Alignment:
Q  147 tgtatttgcagagtgtaccaaaggagtttatgaaaaatagaagtcatgaaaatattgtggagttgaaaatgggaagaaagtcatggttcgtaaaagtcaa 246  Q
    |||||||||||| |||||||||||||||||||||     ||||||||||||||||| ||||||||||| ||||  || ||||||||||||||||||||||    
T  12922053 tgtatttgcagactgtaccaaaggagtttatgaacggaggaagtcatgaaaatattttggagttgaaagtggggggacagtcatggttcgtaaaagtcaa 12921954  T
Q  247 ttattatgagagtgttcatggctggaggttcagtaaaggatggagaaaatttatggaagaatgcaaagtggagattggagatacttgtctctttaatcta 346  Q
    |||||| ||||||||||   |||| ||||| |||||||| ||||||||||| ||| ||| ||||||||||||||| ||||||||||||||||||||  ||    
T  12921953 ttattacgagagtgttcggagctgcaggtttagtaaaggttggagaaaattcatgaaagcatgcaaagtggagatcggagatacttgtctctttaagtta 12921854  T
Q  347 atcgatgagagaaaatttgtgtttgatgtttcaattataggaagaacccattagttgtttgt 408  Q
    || |||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||    
T  12921853 attgatgagagaaaatttgtgtttgatgtttcagttataggatgaatccattagttgtttgt 12921792  T

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Target: chr1; HSP #3
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 140 - 408
Target Start/End: Original strand, 12955999 - 12956268
Alignment:
Q  140 ttttatttgtatttgcagagtgtaccaaaggagtttatgaaaaatagaagtcatgaaaatattgtggagttgaaaatgggaagaaagtcatggttcgtaa 239  Q
    |||| ||||||||||||||||||||||||||||||||||||||   || ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  12955999 ttttgtttgtatttgcagagtgtaccaaaggagtttatgaaaagaggatgtcatgaaaatattgtggagttgaaaatggggagaaagtcatggttcgtaa 12956098  T
Q  240 aagtcaattattatgagagtgttcatggctggaggttcagtaaaggatggagaaaatttatggaagaatgcaaagtggagattggagatacttgtctctt 339  Q
    |||| || ||||| |||||| ||  |||||| |||||||||||||| |||||||| || ||| ||||||||||||||||||||||||||||||||||| |    
T  12956099 aagtgaactattacgagagtatttgtggctgtaggttcagtaaaggttggagaaagttcatgaaagaatgcaaagtggagattggagatacttgtctcct 12956198  T
Q  340 taatctaatcgatgagagaaaatttgtgtttgatgtttcaattatagg-aagaacccattagttgtttgt 408  Q
    |||  | || |||||  ||||||||||||||||||||||||||  ||| ||||| ||||||| |||||||    
T  12956199 taagttgattgatgaacgaaaatttgtgtttgatgtttcaattgcaggaaagaatccattagctgtttgt 12956268  T

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Target: chr1; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 140 - 389
Target Start/End: Complemental strand, 12914740 - 12914491
Alignment:
Q  140 ttttatttgtatttgcagagtgtaccaaaggagtttatgaaaaatagaagtcatgaaaatattgtggagttgaaaatgggaagaaagtcatggttcgtaa 239  Q
    |||| ||||||| ||||| |||||||||||||||||||||||||  || || |||||||||||||||||||||||||||| |||||||||||||| ||||    
T  12914740 ttttgtttgtatctgcagtgtgtaccaaaggagtttatgaaaaaaggatgtaatgaaaatattgtggagttgaaaatggggagaaagtcatggtttgtaa 12914641  T
Q  240 aagtcaattattatgagagtgttcatggctggaggttcagtaaaggatggagaaaatttatggaagaatgcaaagtggagattggagatacttgtctctt 339  Q
    ||||||||| ||||  |||| ||  |||||| |||||||||||||| |||||| |||||||| ||| | |||||||||||||||||||||||||||| ||    
T  12914640 aagtcaatttttatcggagtctttgtggctgtaggttcagtaaaggttggagacaatttatgaaagcaggcaaagtggagattggagatacttgtctttt 12914541  T
Q  340 taatctaatcgatgagagaaaatttgtgtttgatgtttcaattataggaa 389  Q
    |||  |||| |||||||| |||||||||||||||||||||||| ||||||    
T  12914540 taagttaattgatgagaggaaatttgtgtttgatgtttcaattgtaggaa 12914491  T

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Target: chr1; HSP #5
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 140 - 382
Target Start/End: Original strand, 12950243 - 12950485
Alignment:
Q  140 ttttatttgtatttgcagagtgtaccaaaggagtttatgaaaaatagaagtcatgaaaatattgtggagttgaaaatgggaagaaagtcatggttcgtaa 239  Q
    |||| ||||||||||||| |||| |||||||||||||||||||   || || ||||||||||||||||||| |||||||| |||||||||||||| ||||    
T  12950243 ttttgtttgtatttgcagggtgtgccaaaggagtttatgaaaagaggatgtaatgaaaatattgtggagttaaaaatggggagaaagtcatggtttgtaa 12950342  T
Q  240 aagtcaattattatgagagtgttcatggctggaggttcagtaaaggatggagaaaatttatggaagaatgcaaagtggagattggagatacttgtctctt 339  Q
    |||||||||||||||||||| |||||||||| || |||||||| ||||||| |||||||||| ||| |||||||||| |||||||||| |||||||||||    
T  12950343 aagtcaattattatgagagtattcatggctgcagattcagtaagggatggacaaaatttatgaaagcatgcaaagtgaagattggagacacttgtctctt 12950442  T
Q  340 taatctaatcgatgagagaaaatttgtgtttgatgtttcaatt 382  Q
    ||   |||| ||||| || ||||||||||||||||||||||||    
T  12950443 taggttaattgatgaaaggaaatttgtgtttgatgtttcaatt 12950485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 140 - 382
Target Start/End: Original strand, 12942585 - 12942827
Alignment:
Q  140 ttttatttgtatttgcagagtgtaccaaaggagtttatgaaaaatagaagtcatgaaaatattgtggagttgaaaatgggaagaaagtcatggttcgtaa 239  Q
    |||| ||||||||||||||||||||||||||||||||||||||   || || |||||||||| ||||| |||||||||||  |||||||||||| |||||    
T  12942585 ttttgtttgtatttgcagagtgtaccaaaggagtttatgaaaaggggatgtaatgaaaatatcgtggaattgaaaatggggggaaagtcatggtacgtaa 12942684  T
Q  240 aagtcaattattatgagagtgttcatggctggaggttcagtaaaggatggagaaaatttatggaagaatgcaaagtggagattggagatacttgtctctt 339  Q
    |||| || |||||||| ||| ||  |||||| |||||| ||||||| |||||| |||||||| ||| ||||||||||||||||||||||| |||||||||    
T  12942685 aagtgaactattatgatagtatttgtggctgtaggttcggtaaaggttggagacaatttatgaaagcatgcaaagtggagattggagatatttgtctctt 12942784  T
Q  340 taatctaatcgatgagagaaaatttgtgtttgatgtttcaatt 382  Q
    |||  | || ||||||||||  ||| |||||||||||||||||    
T  12942785 taagttgattgatgagagaatttttttgtttgatgtttcaatt 12942827  T

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Target: chr1; HSP #7
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 140 - 389
Target Start/End: Original strand, 12992219 - 12992468
Alignment:
Q  140 ttttatttgtatttgcagagtgtaccaaaggagtttatgaaaaatagaagtcatgaaaatattgtggagttgaaaatgggaagaaagtcatggttcgtaa 239  Q
    |||| |||||||||||||| ||| |||||||||||||||||||   |||||||||||||  || ||||||||||||||||  ||   |||||||  ||||    
T  12992219 ttttgtttgtatttgcagaatgttccaaaggagtttatgaaaagaggaagtcatgaaaactttctggagttgaaaatggggggacgatcatggtctgtaa 12992318  T
Q  240 aagtcaattattatgagagtgttcatggctggaggttcagtaaaggatggagaaaatttatggaagaatgcaaagtggagattggagatacttgtctctt 339  Q
    |||| ||||||||||| ||| ||||||| |  || |||  |  ||| |||||| |||| ||  |||||||||||||||||||||||||||||  ||||||    
T  12992319 aagtgaattattatgatagtattcatggttatagattctctggaggttggagacaattcataaaagaatgcaaagtggagattggagatactcttctctt 12992418  T
Q  340 taatctaatcgatgagagaaaatttgtgtttgatgtttcaattataggaa 389  Q
    |||  | || |||||||| || ||||||||||||||||||||| ||||||    
T  12992419 taagttgattgatgagagcaagtttgtgtttgatgtttcaattgtaggaa 12992468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 12885706 - 12885647
Alignment:
Q  11 gatgaagcataacacattgaaggttttggtgaagaacaaagctccggtaggattaattac 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12885706 gatgaagcataacacattgaaggttttggtgaagaacaaagctccggtaggattaattac 12885647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 149 - 339
Target Start/End: Complemental strand, 12893862 - 12893672
Alignment:
Q  149 tatttgcagagtgtaccaaaggagtttatgaaaaatagaagtcatgaaaatattgtggagttgaaaatgggaagaaagtcatggttcgtaaaagtcaatt 248  Q
    |||||||||  ||||||||| || ||||||||||   || ||||||||||| |||||||||||||||| || | | | ||||||||| ||||||| ||||    
T  12893862 tatttgcaggatgtaccaaatgaatttatgaaaagaggatgtcatgaaaatcttgtggagttgaaaatagggatacaatcatggttcataaaagtgaatt 12893763  T
Q  249 attatgagagtgttcatggctggaggttcagtaaaggatggagaaaatttatggaagaatgcaaagtggagattggagatacttgtctctt 339  Q
    |||||   ||| | | |||||| || ||| ||||||| |||||||| ||| ||||| | ||||||||| || ||||| |||||||||||||    
T  12893762 attatcctagtatccgtggctgtagattcggtaaaggttggagaaattttgtggaaaattgcaaagtgaagtttggaaatacttgtctctt 12893672  T

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Target: chr1; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 201 - 337
Target Start/End: Original strand, 12997910 - 12998045
Alignment:
Q  201 ttgtggagttgaaaatgggaagaaagtcatggttcgtaaaagtcaattattatgagagtgttcatggctggaggttcagtaaaggatggagaaaatttat 300  Q
    |||||||||||||||||||  || | |||||||| |||||||| | |||||||   ||| ||| ||| ||   |||||||||||| |||| |||||||||    
T  12997910 ttgtggagttgaaaatgggg-gacaatcatggtttgtaaaagtgatttattatcctagtattcgtggttgtttgttcagtaaaggttggataaaatttat 12998008  T
Q  301 ggaagaatgcaaagtggagattggagatacttgtctc 337  Q
    ||||||| |||||||||| |||||| |||||||||||    
T  12998009 ggaagaaagcaaagtggaaattggaaatacttgtctc 12998045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 12942465 - 12942524
Alignment:
Q  11 gatgaagcataacacattgaaggttttggtgaagaacaaagctccggtaggattaattac 70  Q
    |||||||||||||||||| |||||| ||||||||||||| || |||||||||||||||||    
T  12942465 gatgaagcataacacattcaaggttatggtgaagaacaatgccccggtaggattaattac 12942524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 12950123 - 12950182
Alignment:
Q  11 gatgaagcataacacattgaaggttttggtgaagaacaaagctccggtaggattaattac 70  Q
    |||||||||||||||||| ||||||||||||||||||| | | |||||||||||||||||    
T  12950123 gatgaagcataacacatttaaggttttggtgaagaacacatccccggtaggattaattac 12950182  T

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Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 303 - 406
Target Start/End: Complemental strand, 13001015 - 13000911
Alignment:
Q  303 aagaatgcaaagtggagattggagatacttgtctctttaatctaatcgatgagagaaaatttgtgtttgatgtttcaattatag-gaagaacccattagt 401  Q
    ||||||||||||||||||||    ||||||||||||| ||  | || ||||||| ||||||||||||| ||||||||||| |||  |||||||||||||     
T  13001015 aagaatgcaaagtggagattctccatacttgtctcttgaagttgattgatgagaaaaaatttgtgtttaatgtttcaattgtagaaaagaacccattagc 13000916  T
Q  402 tgttt 406  Q
    |||||    
T  13000915 tgttt 13000911  T

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Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 12955895 - 12955941
Alignment:
Q  24 acattgaaggttttggtgaagaacaaagctccggtaggattaattac 70  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||||    
T  12955895 acattcaaggttttggtgaagaacacagctccggtaggattaattac 12955941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 12922197 - 12922143
Alignment:
Q  16 agcataacacattgaaggttttggtgaagaacaaagctccggtaggattaattac 70  Q
    |||||||||| || |||||| |||||||||| | || ||||||||||||||||||    
T  12922197 agcataacacgttcaaggttatggtgaagaatagagttccggtaggattaattac 12922143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 171 - 256
Target Start/End: Original strand, 14073726 - 14073811
Alignment:
Q  171 agtttatgaaaaatagaagtcatgaaaatattgtggagttgaaaatgggaagaaagtcatggttcgtaaaagtcaattattatgag 256  Q
    |||||||||||||  ||  | |||||||||||||| ||||||||||||   || | |||||||||||||||||||| | |||||||    
T  14073726 agtttatgaaaaagggatcttatgaaaatattgtgtagttgaaaatggagggataatcatggttcgtaaaagtcaaattttatgag 14073811  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 14069378 - 14069426
Alignment:
Q  171 agtttatgaaaaatagaagtcatgaaaatattgtggagttgaaaatggg 219  Q
    ||||||||||||   || |||||||||||||||||||||| ||||||||    
T  14069378 agtttatgaaaaggggatgtcatgaaaatattgtggagttcaaaatggg 14069426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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