View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20598_low_14 (Length: 423)
Name: NF20598_low_14
Description: NF20598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20598_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 325; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Original strand, 19890857 - 19891260
Alignment:
| Q |
1 |
gttagtagatgttccagaaaatatagagtccaatgctgaattgtatcaaaagttcaaagcttggttggaaaaattttcaaagcaggagcaaatttcaatt |
100 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
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| T |
19890857 |
gttagtagatattccagaaaatatagagtccaatgctgaaatgtatcaaaagttcaaagcttggttggaaaatttttcaaagcaggggcaaatttcaatt |
19890956 |
T |
|
| Q |
101 |
aaaggtcaaaagaagcaaaaaccatcgacaactagaatttcgatccaagaggcagaatctactcaaatagaacataaaaaagcgggatcacatgaaacaa |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||| |
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| T |
19890957 |
aaaggtcaaaagaagcaaaaaccatcgacaactagaatttcgatccaagaggcagaatctgctcaaatagaacataaaaa-gcaggatcacatgaaacaa |
19891055 |
T |
|
| Q |
201 |
tcacatggtcaacaaggtcttttattagttatctatttgtgttagtatttaaatcaaaattcaaaaaactaattatactcttgatacagacttgaactaa |
300 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
19891056 |
tcacatgttcaacaaggtcttttattagttatctatttgtgtcagtatttaaatcaaaattcaaaatgctaattatactcttgatactgacttgaactaa |
19891155 |
T |
|
| Q |
301 |
atatttatttgtttgatgtgtctaaaagccaaactagtggacggctctatgatgaatggattaagcaacaaagtttctgctcaacacaaaacggacgttg |
400 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||| |||| ||| |
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| T |
19891156 |
atatttatttgtttcatgtgtctaaaagccaaactagtggaaggctctatgatgaatggattaaacaacaaagtttctgctcaaatcaaaaaggaccttg |
19891255 |
T |
|
| Q |
401 |
ttaat |
405 |
Q |
| |
|
||||| |
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|
| T |
19891256 |
ttaat |
19891260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 332 - 405
Target Start/End: Original strand, 19891394 - 19891467
Alignment:
| Q |
332 |
aactagtggacggctctatgatgaatggattaagcaacaaagtttctgctcaacacaaaacggacgttgttaat |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||| |
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| T |
19891394 |
aactagtggacggctctatgatgaatggattaaggaacaaagtttctgctgaacacaaaacggaccttgttaat |
19891467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 332 - 405
Target Start/End: Original strand, 19891947 - 19892020
Alignment:
| Q |
332 |
aactagtggacggctctatgatgaatggattaagcaacaaagtttctgctcaacacaaaacggacgttgttaat |
405 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||| |||||||| |
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| T |
19891947 |
aactagtggacggctctatgatgaatggattaaggaacaaagtttctgctgaacacaaaatggaccttgttaat |
19892020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 332 - 384
Target Start/End: Original strand, 19891674 - 19891726
Alignment:
| Q |
332 |
aactagtggacggctctatgatgaatggattaagcaacaaagtttctgctcaa |
384 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
19891674 |
aactagtggacgactctatgatgaatggattaagcaacaaagtttatgctcaa |
19891726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 11493322 - 11492919
Alignment:
| Q |
1 |
gttagtagatgttccagaaaatatagagtccaatgctgaattgtatcaaaagttcaaagcttggttggaaaaattttcaaagcaggagcaaatttcaatt |
100 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
11493322 |
gttagtaaatgttctagaaaatatagagtccaatgctgaattgtatcaaaagttcaaagcttggttggaaaaattttcaaagcaggggcaaatttcaatt |
11493223 |
T |
|
| Q |
101 |
aaaggtcaaaagaagcaaaaaccatcgacaactagaatttcgatccaagaggcagaatctactcaaatagaacataaaaaagcgggatcacatgaaacaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
11493222 |
aaaggtcaaaagaagcaaaaaccatcgacaactagaatttcgatccaagaggtagaatctactcaaatagaacataaaaa-gcaggatcacatgaaacag |
11493124 |
T |
|
| Q |
201 |
tcacatggtcaacaaggtcttttattagttatctatttgtgttagtatttaaatcaaaattcaaaaaactaattatactcttgatacagacttgaactaa |
300 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
11493123 |
tcacatgttcaacaaggtcttttattagttatctatttgtgttagtatttaaatcaaaattcaaaaagctaattatactcttgatattgacttgaactaa |
11493024 |
T |
|
| Q |
301 |
atatttatttgtttgatgtgtctaaaagccaaactagtggacggctctatgatgaatggattaagcaacaaagtttctgctcaacacaaaacggacgttg |
400 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| | ||||| |||| ||| |
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| T |
11493023 |
atatttatttgtttcatgtgtctaaaagccaaactagtggacggctctatcatgaatggattaagcaacaaagtttatgctcgaatcaaaaaggaccttg |
11492924 |
T |
|
| Q |
401 |
ttaat |
405 |
Q |
| |
|
||||| |
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|
| T |
11492923 |
ttaat |
11492919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 337 - 405
Target Start/End: Complemental strand, 11492780 - 11492712
Alignment:
| Q |
337 |
gtggacggctctatgatgaatggattaagcaacaaagtttctgctcaacacaaaacggacgttgttaat |
405 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
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| T |
11492780 |
gtggacggctctatgatgaatggattaaggaacaaagtttctgctcaacacaaaacggaccttgttaat |
11492712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 332 - 384
Target Start/End: Complemental strand, 11492225 - 11492173
Alignment:
| Q |
332 |
aactagtggacggctctatgatgaatggattaagcaacaaagtttctgctcaa |
384 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
11492225 |
aactagtggacgactctatgatgaatggattaagcaacaaagtttgtgctcaa |
11492173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 332 - 384
Target Start/End: Complemental strand, 11492505 - 11492453
Alignment:
| Q |
332 |
aactagtggacggctctatgatgaatggattaagcaacaaagtttctgctcaa |
384 |
Q |
| |
|
|||||||||||| | || ||||||||||||||||||||||||||| ||||||| |
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|
| T |
11492505 |
aactagtggacgaccctttgatgaatggattaagcaacaaagtttatgctcaa |
11492453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 121; Significance: 7e-62; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 249 - 405
Target Start/End: Original strand, 24242314 - 24242470
Alignment:
| Q |
249 |
ttaaatcaaaattcaaaaaactaattatactcttgatacagacttgaactaaatatttatttgtttgatgtgtctaaaagccaaactagtggacggctct |
348 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
24242314 |
ttaaatcaaaattcaaaaagctaattatactcttgatactgacttgaactaaatatttatttgtttcatgtgtctaaaagccaaactagtggacagctct |
24242413 |
T |
|
| Q |
349 |
atgatgaatggattaagcaacaaagtttctgctcaacacaaaacggacgttgttaat |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| || | |||||||| |
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|
| T |
24242414 |
atgatgaatggattaagcaacaaagtttctgctcaaatcaaaaagggccttgttaat |
24242470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 332 - 405
Target Start/End: Original strand, 24242894 - 24242967
Alignment:
| Q |
332 |
aactagtggacggctctatgatgaatggattaagcaacaaagtttctgctcaacacaaaacggacgttgttaat |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||| |
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|
| T |
24242894 |
aactagtggacggctctatgatgaatggattaaggaacaaagtttctgctcaacacaaaacagaccttgttaat |
24242967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 332 - 384
Target Start/End: Original strand, 24243174 - 24243226
Alignment:
| Q |
332 |
aactagtggacggctctatgatgaatggattaagcaacaaagtttctgctcaa |
384 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
24243174 |
aactagtggacgactctatgatgaatggattaagcaacaaagtttatgctcaa |
24243226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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