View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20598_low_15 (Length: 422)
Name: NF20598_low_15
Description: NF20598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20598_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Original strand, 17771553 - 17771958
Alignment:
| Q |
1 |
aaaaatgttactaaagaagagtcttaaggaaggttaaaaattataggattttagaggataaggatatttttagaaagaaaagaaaacttatggaggaaat |
100 |
Q |
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| T |
17771553 |
aaaagtgttactaaagaagagtattaaggaaggttaaaaattataggattttagaggataaggatatttttagaaagaaaagaaaacttatggaggaaat |
17771652 |
T |
|
| Q |
101 |
aagttcgacggttgcagtgccatttttaattgggaatttaatacaaaaagagtcaacagtgacaaatcacatggaaataactggtttaaatcttatgaca |
200 |
Q |
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| T |
17771653 |
aagttcgacggttgcagtgccattttcaattgggaatttaatacaaaaagagtcaacagtgacaaatcacatggaaataactggtttaaatcttatgata |
17771752 |
T |
|
| Q |
201 |
aatacatcatcagttttaatattaaatcctgcttcaattgagggttgtcagtctttttctgttggaagtgttgaagacggcgacgcggatattagtctac |
300 |
Q |
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| T |
17771753 |
aatacatcatcagttttaatattaaatcctgcttcaattgagggttgtcagtctttttctgttggaagtggtgaagacggcgacgcggatattagtcctc |
17771852 |
T |
|
| Q |
301 |
aacatcaacaaatatcagtgtctctagaggttaaggaggatcaagttgcagctgaacctgtctcagaaatggttcttgaaagtgacagttttgaaagaaa |
400 |
Q |
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| T |
17771853 |
aacatcaacaaatatcagtgtctctagaggttaaggaggatcaagttgcagctgaacctgtctcagaaatggttcttgaaagtgacagttttgaaagaaa |
17771952 |
T |
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| Q |
401 |
tgatga |
406 |
Q |
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|||||| |
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| T |
17771953 |
tgatga |
17771958 |
T |
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