View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20598_low_19 (Length: 380)
Name: NF20598_low_19
Description: NF20598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20598_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 13 - 363
Target Start/End: Original strand, 10957827 - 10958176
Alignment:
| Q |
13 |
aatatataagacatttttatttcaagagatgtcacatatcatgaacatatcttaccttatcatgatatagatcctacattaatttggacctatcactcat |
112 |
Q |
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| T |
10957827 |
aatatataagacatttttatttcaagagatgtcacatatcatgaacatatcttaccttatcatgatatagatcctacattaatttggacctatcactcat |
10957926 |
T |
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| Q |
113 |
caaaaccctcccttgttgcttcccacaatgatgatgcttctcatgcatgcacccaagtttaggagccatcatgccattgcatttataagaagacaccatt |
212 |
Q |
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| T |
10957927 |
caaaaccctcccttgttgcttcccacaatgatgatacttctcatgcatgcacccaagtttaggagccatcatgccattgcatttataagaagacaccatt |
10958026 |
T |
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| Q |
213 |
tcaaaccccataatgcttatatcaattgagaccaacccttcttaaaatattcaaaacccagaacaagaacctgaactaagaagatccactagacccttaa |
312 |
Q |
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| T |
10958027 |
tcaaaccccataatgcttatatcaattgagaccaacccttcttaaaatattcaaaacccagaacaagaacctgaactaagaagatccactagacccttaa |
10958126 |
T |
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| Q |
313 |
aacaaatcttcacttctttatgatttaccaatgaagtcgctcaatgagttc |
363 |
Q |
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| T |
10958127 |
aacaaatcttcacttctttatga-ttaccaatgaagtcgctcaatgagttc |
10958176 |
T |
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