View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20598_low_2 (Length: 830)

Name: NF20598_low_2
Description: NF20598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20598_low_2
NF20598_low_2
[»] chr3 (8 HSPs)
chr3 (18-830)||(1425464-1426276)
chr3 (25-830)||(1447550-1448368)
chr3 (219-825)||(1470229-1470847)
chr3 (656-713)||(19757714-19757771)
chr3 (659-719)||(46145793-46145853)
chr3 (663-713)||(19736812-19736862)
chr3 (656-713)||(51448288-51448345)
chr3 (656-713)||(52138474-52138531)
[»] chr8 (5 HSPs)
chr8 (655-767)||(41444882-41444994)
chr8 (656-713)||(15215849-15215906)
chr8 (658-767)||(25985134-25985241)
chr8 (656-713)||(12492421-12492478)
chr8 (656-713)||(36565820-36565877)
[»] chr4 (7 HSPs)
chr4 (656-716)||(10775998-10776058)
chr4 (665-715)||(30807242-30807292)
chr4 (656-713)||(435875-435932)
chr4 (656-713)||(23906880-23906937)
chr4 (656-713)||(33226855-33226912)
chr4 (656-713)||(39708103-39708160)
chr4 (656-713)||(48174672-48174729)
[»] chr5 (6 HSPs)
chr5 (678-767)||(6368526-6368615)
chr5 (656-713)||(2076053-2076110)
chr5 (656-713)||(3301495-3301552)
chr5 (656-713)||(3394356-3394413)
chr5 (656-713)||(20318637-20318694)
chr5 (656-717)||(28977436-28977497)
[»] chr2 (4 HSPs)
chr2 (656-717)||(11992685-11992746)
chr2 (678-776)||(26433786-26433884)
chr2 (656-713)||(2610174-2610231)
chr2 (656-713)||(8180426-8180483)
[»] chr1 (5 HSPs)
chr1 (651-767)||(28528173-28528289)
chr1 (663-737)||(6640748-6640822)
chr1 (656-713)||(8671566-8671623)
chr1 (686-767)||(16273438-16273519)
chr1 (656-713)||(51601704-51601761)
[»] scaffold0113 (1 HSPs)
scaffold0113 (656-711)||(12177-12232)
[»] scaffold0570 (1 HSPs)
scaffold0570 (656-713)||(2849-2906)
[»] scaffold0171 (1 HSPs)
scaffold0171 (656-713)||(5838-5895)
[»] chr7 (2 HSPs)
chr7 (656-713)||(32630253-32630310)
chr7 (656-713)||(46356430-46356487)
[»] chr6 (2 HSPs)
chr6 (656-713)||(10100436-10100493)
chr6 (656-713)||(20428215-20428272)


Alignment Details
Target: chr3 (Bit Score: 712; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 712; E-Value: 0
Query Start/End: Original strand, 18 - 830
Target Start/End: Original strand, 1425464 - 1426276
Alignment:
Q  18 ctatatatataataaatgcatccatctcaatcttcatttgagaaaccatgtaactgtatagaatagtctagtggaaagaatagaccatgaacaagccaat 117  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1425464 ctatatatataataaatgcatccatctcaatcttcattcgagaaaccatgtaactgtatagaatagtctagtggaaagaatagaccatgaacaagccaat 1425563  T
Q  118 gcttaaggtatttgaaaactctacaagcagtactataatgaatatttgtgggtttggataagaattagccaagttgttgcatgatatctagttatgtagt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  1425564 gcttaaggtatttgaaaactctacaagcagtactataatgaatatttgtgggtttggataagaattagccaagttgttgcatgatatctagttatgtaat 1425663  T
Q  218 gtgagatgataaattcaatgaatgagtcttctgtaagtatgaatatcaccaatgtgtattatcatcattatgtaacttgatagaagtattagaaggttta 317  Q
    ||||||| || |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1425664 gtgagataatgaattcaatgaataagtcttttgtaagtatgaatatcaccaatgtgtattatcatcattatgtaacttgatggaagtattagaaggttta 1425763  T
Q  318 gatgtaggttaagatccacgtaatcttcagtcaccaagtaaacccaagtattattgtcccataaatttatgttcatgttagctctaattctatcccgtct 417  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1425764 gatgtaggttaagatccaagtaatcttcagtcaccaagtaaacccaagtattattgtcccataaatttatgttcatgttagctctaattctattccgtct 1425863  T
Q  418 aatcttactataaatcgaacacaacttcctcatatctactatgcttaatttatgtttgtgctgattgtttaccaccaaacatcatcagctttattgatgt 517  Q
    |||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  1425864 aatcttactatacatccaacacaacgtcctcatatctactatgcttaatttatgtttttgctggttgtttaccaccaaacatcatcagctttattgatgt 1425963  T
Q  518 tcgatnnnnnnnttctttcaacatgaacggtactttcgaatcacacaaaacacacgaggcattcgtctagttcaaccacccatccatgggtttgatgatt 617  Q
    |||||       |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1425964 tcgataaaaaaattctttcaacgtgaacggtactttcgaatcacacaaaacacacgaggcattcgtctagttcaaccacccatccatgggtttgatgatt 1426063  T
Q  618 tacatctccttctatttatttgttgtttttcttcataaacccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctctaag 717  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1426064 tacatctccttctatttatttgttgtttttctttataaacccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctttaag 1426163  T
Q  718 ttggaaatgtttcatctcttgttaaaattttatttcatatactttgtctttttctacttatgtgaaagccaaatgtttttaagattttctcaaagtatct 817  Q
    || ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1426164 ttagaaatgtttcacctcttgttaaaattttatttcatatactttgtctttttctacatatgtgaaagccaaatgtttttaagattttctcaaagtatct 1426263  T
Q  818 aacctcacaagta 830  Q
    |||||||||||||    
T  1426264 aacctcacaagta 1426276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 25 - 830
Target Start/End: Original strand, 1447550 - 1448368
Alignment:
Q  25 tataataaatgcatccatctcaatcttcatttgagaaaccatgtaactgtatagaatagtctagtggaaagaata-gaccatgaacaagccaatgcttaa 123  Q
    |||||||||||||| |||  ||| ||||||||||||||||||||||||||||| |||||||||||||||| || | ||||||  || |||||||||||||    
T  1447550 tataataaatgcatacattccaaccttcatttgagaaaccatgtaactgtatacaatagtctagtggaaaaaaaaagaccatcgactagccaatgcttaa 1447649  T
Q  124 ggtatttgaaaactctacaagcagtactataatgaatatttgtgggtttggataagaattagccaagttgtt-------gca--tgatatctagttatgt 214  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||       | |  ||||||||||||||||    
T  1447650 ggtatttgaaaactctacaagcagtactacaatgaatatttgtgggtttggataagaattagctaagttgttaactgatgaaggtgatatctagttatgt 1447749  T
Q  215 agtgtgagatgataaattcaatgaatgagtcttctgtaagtatgaatatcaccaatg--tgtattatcatcattatgtaacttgatagaagtattagaag 312  Q
    | ||||||||  | ||||||||||||||||||| |||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  1447750 aatgtgagatactgaattcaatgaatgagtcttttgtaagtaggaatatcaccaatgggtgtattatcatcattatgtaacttgatagaagtattagaag 1447849  T
Q  313 gtttagatgtaggttaagatccacgtaatcttcagtcaccaagtaaacccaagtattattgtcccataaatttatgttcatgttagctctaattctatcc 412  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||| |||||    
T  1447850 gtttagatgtaggttaagatccaagtaatcttcagtcaccaagtaaacctaagtagtattgtcccataaatttatgttca-gttagctctaattttatcc 1447948  T
Q  413 cgtctaatcttactataaatcgaacacaacttcctcatatctactatgcttaatttatgtttgtgctgattgtttaccaccaaacatcatcagctttatt 512  Q
    | |||| |||||||| | ||| ||||||||||| ||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||| ||||||    
T  1447949 cctctagtcttactacacatccaacacaacttcttcatatctattatgcttaatttatgtttgtgttggttgtttaccaccaaacatcatcagttttatt 1448048  T
Q  513 gatgttcgatnnnnnnnttctttcaaca--tgaacggtactttcgaatcacacaaaacacacgaggcattcgtctagttcaaccacccatccatgggttt 610  Q
    ||||||||||       || ||||||||  |||   ||||||||| |||||| |||||||||||||||||| || | ||||||||||||| ||  |||||    
T  1448049 gatgttcgat-aaaaatttatttcaacacgtgagtagtactttcgcatcacataaaacacacgaggcattcctccatttcaaccacccatgca-aggttt 1448146  T
Q  611 gatgatttacatctccttctatttatttgttgtttttcttcataaacccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcac 710  Q
    |||||||||||||||||| ||||| |||||||||||||   |||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||| ||    
T  1448147 gatgatttacatctccttttatttctttgttgtttttcactataaacccaaaatatttaaaccatgcaacttttgatatgatatgatctccaacttttac 1448246  T
Q  711 ctctaagttggaaatgtttcatctcttgttaaaattttatttcatatactttgtcttt-ttctacttatgtgaaagccaaatg-tttttaagattttctc 808  Q
    ||||||| | ||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||| | ||||||||||||||||    
T  1448247 ctctaagctagaaatgtttcacctcttgttaaaattttatttcatatattttgtctttcttctactcatgtgaaagccaaacgttttttaagattttctc 1448346  T
Q  809 aaagtatctaacctcacaagta 830  Q
    |||||||||||||||| |||||    
T  1448347 aaagtatctaacctcaaaagta 1448368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 219 - 825
Target Start/End: Original strand, 1470229 - 1470847
Alignment:
Q  219 tgagatgataaattcaatgaatgagtcttctgtaagtatgaatatcaccaatg--tgtattatcatcattatgtaacttgatagaagtattagaaggttt 316  Q
    |||||| || ||||||||||| | ||||| |||||||| ||||||||||||||  ||||||||||||||||| ||||||||| ||||||||| ||||| |    
T  1470229 tgagataatgaattcaatgaaggggtcttttgtaagtaggaatatcaccaatgggtgtattatcatcattatataacttgatggaagtattataaggtct 1470328  T
Q  317 agatgtaggttaagatccacgtaatcttcagtcaccaagtaaacccaagtattattgtcccataaatttatgttcatgttagctctaattctatcccgtc 416  Q
     ||| |||||| ||||||| |||||||||||||| |||||||||| ||||| ||||| |||||||||||||||||||||||| ||||||||||||  |||    
T  1470329 tgatttaggtttagatccaagtaatcttcagtcatcaagtaaacctaagtagtattgccccataaatttatgttcatgttaggtctaattctatcatgtc 1470428  T
Q  417 taatcttactataaatcgaacacaacttcctcatatctactatgcttaatttatgtttgtgctgattgtttaccaccaaacatcatcagctttattgatg 516  Q
    ||  ||||| | | | | ||||||||||    || |||||||||||||||||||||||||| || ||| ||||||||||||||| |  | |||| | |||    
T  1470429 tagccttacaacatacccaacacaacttttgtatctctactatgcttaatttatgtttgtgttggttgcttaccaccaaacatcgttggttttactaatg 1470528  T
Q  517 ttcgatnnnnnnn----------ttctttcaacatgaacggtactttcgaatcacacaaaacacacgaggcattcgtctagttcaaccacccatccatgg 606  Q
    ||||||                 |||||||||  |||  ||| |||| | |||||| |||| |||| || ||||| || | ||| |||||||||| | ||    
T  1470529 ttcgataaaaaaaaaaaaaaaaattctttcaatgtgagtggtgcttt-gcatcacataaaatacacaagacattcctccatttctaccacccatcta-gg 1470626  T
Q  607 gtttgatgatttacatctccttctatttatttgttgtttttcttcataaacccaaaatatttaaaccatacaacttttggtataatatgatctccaactt 706  Q
    |||||||||||||||| |||||||||| ||||||||||||||   ||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||    
T  1470627 gtttgatgatttacatttccttctattcatttgttgtttttcactataaaccaaaaatatttaaaccatgcaacttttggtatgatatgatctccaactt 1470726  T
Q  707 tcacctctaagttggaaatgtttcatctcttgttaaaattttatttcatatactttgtcttt-ttctacttatgtgaaagccaaatgtttttaag-attt 804  Q
    |||||||||||    ||||| |||| |||||| ||||||||||||||||||||| ||||||| ||||||| ||  |||| ||||| |||||| || ||||    
T  1470727 tcacctctaagcaataaatgattcacctcttgctaaaattttatttcatatactctgtctttattctactcatacgaaacccaaacgttttttagaattt 1470826  T
Q  805 tctcaaagtatctaacctcac 825  Q
    ||| |||||||||||||||||    
T  1470827 tctaaaagtatctaacctcac 1470847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 656 - 713
Target Start/End: Complemental strand, 19757771 - 19757714
Alignment:
Q  656 acccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctc 713  Q
    |||||| |||||||||||||  |||||  ||||| |||||||||||||||||||||||    
T  19757771 acccaagatatttaaaccatgtaacttggggtatgatatgatctccaactttcacctc 19757714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 659 - 719
Target Start/End: Complemental strand, 46145853 - 46145793
Alignment:
Q  659 caaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctctaagtt 719  Q
    ||||||||||||||| || ||||| |||||| | || |||||||||||| |||||||||||    
T  46145853 caaaatatttaaaccgtataacttgtggtatgacataatctccaactttaacctctaagtt 46145793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 663 - 713
Target Start/End: Complemental strand, 19736862 - 19736812
Alignment:
Q  663 atatttaaaccatacaacttttggtataatatgatctccaactttcacctc 713  Q
    |||||||||||||  |||||  ||||| |||||||||||||||||||||||    
T  19736862 atatttaaaccatgtaacttggggtatgatatgatctccaactttcacctc 19736812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 656 - 713
Target Start/End: Original strand, 51448288 - 51448345
Alignment:
Q  656 acccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctc 713  Q
    |||||| ||||||||||| |  |||||  ||||| |||||||||||||||||||||||    
T  51448288 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctc 51448345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 656 - 713
Target Start/End: Complemental strand, 52138531 - 52138474
Alignment:
Q  656 acccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctc 713  Q
    |||||| ||||||||||| |  |||||  ||||| |||||||||||||||||||||||    
T  52138531 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctc 52138474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 655 - 767
Target Start/End: Original strand, 41444882 - 41444994
Alignment:
Q  655 aacccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctctaagttggaaatgtttcatctcttgttaaaattttatttca 754  Q
    ||||||| ||||||||||||   ||||| |||||| |||||||||||| |||||||||||||||| |||||| |||  || ||| |||||||  ||| ||    
T  41444882 aacccaagatatttaaaccaagtaacttgtggtatgatatgatctccacctttcacctctaagttagaaatgcttcgccttttgctaaaattacattcca 41444981  T
Q  755 tatactttgtctt 767  Q
    |||||||| ||||    
T  41444982 tatactttatctt 41444994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 656 - 713
Target Start/End: Original strand, 15215849 - 15215906
Alignment:
Q  656 acccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctc 713  Q
    |||||| ||||||||||| |  |||||| ||||| |||||||||||||||||||||||    
T  15215849 acccaatatatttaaaccgtgtaactttgggtatgatatgatctccaactttcacctc 15215906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 658 - 767
Target Start/End: Complemental strand, 25985241 - 25985134
Alignment:
Q  658 ccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctctaagttggaaatgtttcatctcttgttaaaattttatttcatat 757  Q
    |||| ||||||||||| |  ||||| |||||| ||||||||  ||||||||||||||||| | |||||| |||  |||||| |||| ||  ||| |||||    
T  25985241 ccaatatatttaaaccgtgtaacttgtggtatgatatgatc--caactttcacctctaagctagaaatgcttcgcctcttgctaaacttacattccatat 25985144  T
Q  758 actttgtctt 767  Q
    ||| ||||||    
T  25985143 actctgtctt 25985134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 656 - 713
Target Start/End: Original strand, 12492421 - 12492478
Alignment:
Q  656 acccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctc 713  Q
    |||||| ||||||||||| |  |||||  ||||| |||||||||||||||||||||||    
T  12492421 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctc 12492478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 656 - 713
Target Start/End: Original strand, 36565820 - 36565877
Alignment:
Q  656 acccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctc 713  Q
    |||||| ||||||||||| |  |||||  ||||| |||||||||||||||||||||||    
T  36565820 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctc 36565877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 656 - 716
Target Start/End: Original strand, 10775998 - 10776058
Alignment:
Q  656 acccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctctaa 716  Q
    |||||| |||||||||||||  ||||| |||||| |||||||||||||||||| |||||||    
T  10775998 acccaagatatttaaaccatgtaacttgtggtatgatatgatctccaactttcccctctaa 10776058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 665 - 715
Target Start/End: Complemental strand, 30807292 - 30807242
Alignment:
Q  665 atttaaaccatacaacttttggtataatatgatctccaactttcacctcta 715  Q
    ||||||||| |  ||||| |||||| |||||||||||||||||||||||||    
T  30807292 atttaaaccgtgtaacttgtggtatgatatgatctccaactttcacctcta 30807242  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 656 - 713
Target Start/End: Complemental strand, 435932 - 435875
Alignment:
Q  656 acccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctc 713  Q
    |||||| ||||||||||| |  |||||  ||||| |||||||||||||||||||||||    
T  435932 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctc 435875  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 656 - 713
Target Start/End: Original strand, 23906880 - 23906937
Alignment:
Q  656 acccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctc 713  Q
    |||||| ||||||||||| |  |||||  ||||| |||||||||||||||||||||||    
T  23906880 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctc 23906937  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 656 - 713
Target Start/End: Complemental strand, 33226912 - 33226855
Alignment:
Q  656 acccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctc 713  Q
    |||||| ||||||||||| |  |||||  ||||| |||||||||||||||||||||||    
T  33226912 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctc 33226855  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 656 - 713
Target Start/End: Complemental strand, 39708160 - 39708103
Alignment:
Q  656 acccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctc 713  Q
    |||||| |||||||||||  | |||||  ||||||||||||||||||| |||||||||    
T  39708160 acccaagatatttaaaccgcataacttgaggtataatatgatctccaaatttcacctc 39708103  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 656 - 713
Target Start/End: Original strand, 48174672 - 48174729
Alignment:
Q  656 acccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctc 713  Q
    |||||| ||||||||||| |  |||||  ||||| |||||||||||||||||||||||    
T  48174672 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctc 48174729  T

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Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 678 - 767
Target Start/End: Original strand, 6368526 - 6368615
Alignment:
Q  678 aacttttggtataatatgatctccaactttcacctctaagttggaaatgtttcatctcttgttaaaattttatttcatatactttgtctt 767  Q
    ||||| ||||||  ||||||||||| ||||||||||||  || ||||||||||| |||||| |||||||  | | ||||||| |||||||    
T  6368526 aacttgtggtatgttatgatctccatctttcacctctacattagaaatgtttcacctcttgctaaaattacaatccatataccttgtctt 6368615  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 656 - 713
Target Start/End: Original strand, 2076053 - 2076110
Alignment:
Q  656 acccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctc 713  Q
    |||||| ||||||||||| |  |||||  ||||| |||||||||||||||||||||||    
T  2076053 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctc 2076110  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 656 - 713
Target Start/End: Complemental strand, 3301552 - 3301495
Alignment:
Q  656 acccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctc 713  Q
    |||||| ||||||||||| |  |||||  ||||| |||||||||||||||||||||||    
T  3301552 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctc 3301495  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 656 - 713
Target Start/End: Complemental strand, 3394413 - 3394356
Alignment:
Q  656 acccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctc 713  Q
    |||||| ||||||||||| |  |||||  ||||| |||||||||||||||||||||||    
T  3394413 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctc 3394356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 656 - 713
Target Start/End: Complemental strand, 20318694 - 20318637
Alignment:
Q  656 acccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctc 713  Q
    |||||| ||||||||||| |  |||||  ||||| |||||||||||||||||||||||    
T  20318694 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctc 20318637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 656 - 717
Target Start/End: Original strand, 28977436 - 28977497
Alignment:
Q  656 acccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctctaag 717  Q
    |||||| ||||||||||| |   ||||  ||||| |||||||||||||||||||||||||||    
T  28977436 acccaagatatttaaaccgtgtgacttggggtatgatatgatctccaactttcacctctaag 28977497  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 656 - 717
Target Start/End: Original strand, 11992685 - 11992746
Alignment:
Q  656 acccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctctaag 717  Q
    |||||| ||||||||||| |  |||||  ||||| |||||||||||||||||||||||||||    
T  11992685 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctctaag 11992746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 678 - 776
Target Start/End: Complemental strand, 26433884 - 26433786
Alignment:
Q  678 aacttttggtataatatgatctccaactttcacctctaagttggaaatgtttcatctcttgttaaaattttatttcatatactttgtctttttctactt 776  Q
    ||||| |||||| | ||||||||||||||||| ||||||||| ||||| ||  | || ||  || ||||| ||| ||||||||||||||  ||||||||    
T  26433884 aacttgtggtatgacatgatctccaactttcatctctaagttagaaatattaaacctttttctacaatttcattccatatactttgtctgcttctactt 26433786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 656 - 713
Target Start/End: Complemental strand, 2610231 - 2610174
Alignment:
Q  656 acccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctc 713  Q
    |||||| ||||||||||| |  |||||  ||||| |||||||||||||||||||||||    
T  2610231 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctc 2610174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 656 - 713
Target Start/End: Complemental strand, 8180483 - 8180426
Alignment:
Q  656 acccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctc 713  Q
    |||||||||||||||||| |  |||||   |||| |||||||||||||||||||||||    
T  8180483 acccaaaatatttaaaccgtgtaacttggagtatgatatgatctccaactttcacctc 8180426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 651 - 767
Target Start/End: Complemental strand, 28528289 - 28528173
Alignment:
Q  651 cataaacccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctctaagttggaaatgtttcatctcttgttaaaattttat 750  Q
    |||| |||||| ||||||||||  |  ||||| ||||||  |||||||||||||||||||||||| | | |||| | |||  |||||| ||||| | |||    
T  28528289 catagacccaagatatttaaactgtgtaacttgtggtatgctatgatctccaactttcacctctaggctagaaacgcttcgcctcttgctaaaactatat 28528190  T
Q  751 ttcatatactttgtctt 767  Q
      |||||||||||||||    
T  28528189 cccatatactttgtctt 28528173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 663 - 737
Target Start/End: Complemental strand, 6640822 - 6640748
Alignment:
Q  663 atatttaaaccatacaacttttggtataatatgatctccaactttcacctctaagttggaaatgtttcatctctt 737  Q
    ||||||||||| |  ||||| |||| |||||||||||| ||||||||||||||   | |||| ||||||||||||    
T  6640822 atatttaaaccgtgtaacttgtggtgtaatatgatctctaactttcacctctacactagaaacgtttcatctctt 6640748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 656 - 713
Target Start/End: Complemental strand, 8671623 - 8671566
Alignment:
Q  656 acccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctc 713  Q
    |||||| ||||||||||| |  |||||  ||||| |||||||||||||||||||||||    
T  8671623 acccaagatatttaaaccgtgtaacttagggtatgatatgatctccaactttcacctc 8671566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 686 - 767
Target Start/End: Original strand, 16273438 - 16273519
Alignment:
Q  686 gtataatatgatctccaactttcacctctaagttggaaatgtttcatctcttgttaaaattttatttcatatactttgtctt 767  Q
    |||| ||||||||||||||||||| ||||||| |  || | |||||||| ||||| |||||  ||| |||||||| ||||||    
T  16273438 gtatgatatgatctccaactttcatctctaaggtcaaactatttcatcttttgttgaaattacattacatatactatgtctt 16273519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 656 - 713
Target Start/End: Complemental strand, 51601761 - 51601704
Alignment:
Q  656 acccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctc 713  Q
    |||||| ||||||||||| |  |||||  ||||| |||||||||||||||||||||||    
T  51601761 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctc 51601704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 656 - 711
Target Start/End: Original strand, 12177 - 12232
Alignment:
Q  656 acccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacc 711  Q
    |||||| |||||||||||||  |||||  ||||| |||||||||||||||||||||    
T  12177 acccaagatatttaaaccatgtaacttggggtatgatatgatctccaactttcacc 12232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 656 - 713
Target Start/End: Original strand, 2849 - 2906
Alignment:
Q  656 acccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctc 713  Q
    |||||| ||||||||||| |  |||||  ||||| |||||||||||||||||||||||    
T  2849 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctc 2906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 656 - 713
Target Start/End: Complemental strand, 5895 - 5838
Alignment:
Q  656 acccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctc 713  Q
    |||||| ||||||||||| |  |||||  ||||| |||||||||||||||||||||||    
T  5895 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctc 5838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 656 - 713
Target Start/End: Complemental strand, 32630310 - 32630253
Alignment:
Q  656 acccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctc 713  Q
    |||||| ||||||||||| |  |||||  ||||| |||||||||||||||||||||||    
T  32630310 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctc 32630253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 656 - 713
Target Start/End: Original strand, 46356430 - 46356487
Alignment:
Q  656 acccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctc 713  Q
    |||||| ||||||||||| |  |||||  ||||| |||||||||||||||||||||||    
T  46356430 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctc 46356487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 656 - 713
Target Start/End: Original strand, 10100436 - 10100493
Alignment:
Q  656 acccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctc 713  Q
    |||||| ||||||||||| |  |||||  ||||| |||||||||||||||||||||||    
T  10100436 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctc 10100493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 656 - 713
Target Start/End: Original strand, 20428215 - 20428272
Alignment:
Q  656 acccaaaatatttaaaccatacaacttttggtataatatgatctccaactttcacctc 713  Q
    |||||| |||||||||||    ||||| |||||| |||||||||||||||||||||||    
T  20428215 acccaatatatttaaaccgcgtaacttgtggtatgatatgatctccaactttcacctc 20428272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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