View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20598_low_21 (Length: 347)
Name: NF20598_low_21
Description: NF20598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20598_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 25 - 335
Target Start/End: Original strand, 40676065 - 40676375
Alignment:
| Q |
25 |
aatttgtcattgatataacctaaattttatagtcaaattagttgatagtgaactgataacattatgtgagatcgatgtgcaacatgacacgtcacaccct |
124 |
Q |
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| T |
40676065 |
aatttgtcattgatataacctaaattttatagtcaaattagttgatagtgaactgataacattatgtgagatcgatgtgcaatatgacacgtcacaccct |
40676164 |
T |
|
| Q |
125 |
cttaataacagaagctaagtgagggacattttgcgtgacattttacaatttctaaaatgtatatgccaattagaaaaattgagaaattatttcaatcata |
224 |
Q |
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| T |
40676165 |
cttaataacaaaagctaagtgagggacattttgcgtgacattttacaatttctaaaatgtatatgccaattcgaaaaattgagaaattatttcaatcata |
40676264 |
T |
|
| Q |
225 |
cttacagtttcggtgactaatctgctgattcagttttttagttattgagcagcaagaacatttaactgtaaattagtatatcactgtaataacagtataa |
324 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40676265 |
cttacagtttcggtgactaatctgctgattcatttttttaggtattgagcagcaagaacatttaactgtaaattagtatatcactgtaataacagtataa |
40676364 |
T |
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| Q |
325 |
catttgatttt |
335 |
Q |
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||||||||||| |
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| T |
40676365 |
catttgatttt |
40676375 |
T |
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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 10096829 - 10096880
Alignment:
| Q |
25 |
aatttgtcattgatataacctaaattttatagtcaaattagttgatagtgaa |
76 |
Q |
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||||||||| |||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
10096829 |
aatttgtcactgatatgacctaaattttataggcaaattagttgatagtgaa |
10096880 |
T |
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