View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20598_low_22 (Length: 346)
Name: NF20598_low_22
Description: NF20598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20598_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 16 - 334
Target Start/End: Original strand, 29041533 - 29041847
Alignment:
| Q |
16 |
gaaacaatatgtcagatgccatagctagatataaaatttctacatatggaatatattgtaagattggaagtagatccagtccacgaaatctttataatgn |
115 |
Q |
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| T |
29041533 |
gaaacaatatgtcagataccatagctagatataaa--ttctacatatggaatatattgtaagattggaagtagatcaagtccacgaaatctttataatga |
29041630 |
T |
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| Q |
116 |
nnnnnnnnttatttgatgcttcttaatattaatgtattttgatttccttaaaaaacatatattaatgtattttaatgtactatgacagtagtagtagtag |
215 |
Q |
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| T |
29041631 |
aaaaaaa-ttatttgatgcttcttaatattaatgtattttgatttccttaaaaaacatatattaatgtattttaatgtactatgacagtagtagtagtat |
29041729 |
T |
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| Q |
216 |
taatttaaagtacaagccatgtgtcggaagggttaacattaattgcaatgttctattcctaacgacataagccaatagatcagcagctattgatgctata |
315 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
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| T |
29041730 |
ta-tttaaagtacaagccatgtgtcggaagggttaacattaattgcaatgttctattcttaacgacataagccaataaatcagcagctattgatgctata |
29041828 |
T |
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| Q |
316 |
gcacccataaacacaggtt |
334 |
Q |
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| T |
29041829 |
gcaaccataaacccaggtt |
29041847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 327
Target Start/End: Complemental strand, 28744667 - 28744582
Alignment:
| Q |
242 |
gaagggttaacattaattgcaatgttctattcctaacgacataagccaatagatcagcagctattgatgctatagcacccataaac |
327 |
Q |
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| T |
28744667 |
gaagggtgaacaataattgcaatgttctgtttctgatgacaaaggccaataaatcagcagctactgatgcaataacagccataaac |
28744582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 158
Target Start/End: Complemental strand, 28744884 - 28744850
Alignment:
| Q |
124 |
ttatttgatgcttcttaatattaatgtattttgat |
158 |
Q |
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|||||||||||||||| |||||||||||||||||| |
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| T |
28744884 |
ttatttgatgcttcttgatattaatgtattttgat |
28744850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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