View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20598_low_24 (Length: 336)
Name: NF20598_low_24
Description: NF20598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20598_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 297; Significance: 1e-167; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 4390193 - 4390517
Alignment:
| Q |
1 |
ccctgttttcttccattcaactctatgatgatcttccaaagcttcattcaccaacttaacttcttccctcaaatacttccctttaatctcatcaaaagac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4390193 |
ccctgttttcttccattcaactctatgatgatcttccaaagcttcattcaccaacttaacttcttccctcaaatacttccctttaatctcatcaaaagac |
4390292 |
T |
|
| Q |
101 |
ggcgggacaaaccctacaccacatctcgaaaccatatcacacattctaacaaactccttactcttcacagccttcatcggtattgcattgttgtagaaaa |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4390293 |
ggcggcacaaaccctacaccacatctcgaaaccatatcacacattctaacaaactccttactcttcaccgccttcatcggtattgcattgttgtagaaaa |
4390392 |
T |
|
| Q |
201 |
acctcgcaatcgctctacacgcttcctgctgaatattatcaccactagctattgacccatctctcattctcttgaaaatgtcttcaaaatcaaaactttc |
300 |
Q |
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||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4390393 |
acctcgcaatcgctcgacacgcttcctcctgaatattatcaccactagctaatgacccatctctcattctcttgaaaatatcttcaaaatcaaaactttc |
4390492 |
T |
|
| Q |
301 |
ttcatcaaaatcatttccttttctt |
325 |
Q |
| |
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|||||||| |||||||||||||||| |
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| T |
4390493 |
ttcatcaacatcatttccttttctt |
4390517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 4377510 - 4377837
Alignment:
| Q |
1 |
ccctgttttcttccattcaactctatgatgatcttccaaagcttcattcaccaacttaacttcttccctcaaatacttccctttaatctcatcaaaagac |
100 |
Q |
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||||||||||||||||| ||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4377510 |
ccctgttttcttccattgaactctatgatgatcgtccaaagctttattgaccaacttaacttcttccctcaaatacttccctttaatctcatcaaaagac |
4377609 |
T |
|
| Q |
101 |
ggcgggacaaaccctacaccacatctcgaaaccatatcacacattctaacaaactccttactcttcacagccttcatcggtattgcattgttgtagaaaa |
200 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||| |||||| |||||||||||||| |
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| T |
4377610 |
ggcggcacaaaccctacaccacatctcgaaaccatatcacacattcgaacaaactccatactcttcaccgccttcattggtattaaattgttgtagaaaa |
4377709 |
T |
|
| Q |
201 |
acctcgcaatcgctctacacgcttcctgctga---atattatcaccactagctattgacccatctctcattctcttgaaaatgtcttcaaaatcaaaact |
297 |
Q |
| |
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||||||||||||||| ||||||||||| || | |||||||||||||||||| || |||||| | || |||||||||| ||||||||||||||||| |
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| T |
4377710 |
acctcgcaatcgctcgacacgcttcctcctcatttttattatcaccactagctaatgcgccatctgtttttttcttgaaaatatcttcaaaatcaaaact |
4377809 |
T |
|
| Q |
298 |
ttcttcatcaaaatcatttccttttctt |
325 |
Q |
| |
|
||| || ||| || ||||||||||||| |
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| T |
4377810 |
ttcaccaccaacattatttccttttctt |
4377837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 5 - 325
Target Start/End: Original strand, 4385087 - 4385410
Alignment:
| Q |
5 |
gttttcttccattcaactctatgatgatcttccaaagcttcattcaccaacttaacttcttccctcaaatacttccctttaatctcatcaaaagacggcg |
104 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
4385087 |
gttttcttccattgaactctatga---tcttccaaagctttattcaccaacttaacttcttccctcaaatacttccctctaatctcatcaaaagatggcg |
4385183 |
T |
|
| Q |
105 |
ggacaaaccctacaccacatctcgaaaccatatcacacattctaacaaactccttactcttcacagccttcatcggtattgcattgttgtagaaaaacct |
204 |
Q |
| |
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| |||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
4385184 |
gcacaaaccctacaccacatctcgaaaccatagcacacatttgaacaaactccatactcttcaccgccttcatcggtattgcattgttgtagaaaaacct |
4385283 |
T |
|
| Q |
205 |
cgcaatcgctctacacgcttcctgctgaa------tattatcaccactagctattgacccatctctcattctcttgaaaatgtcttcaaaatcaaaactt |
298 |
Q |
| |
|
||||||||||| ||||||||||| || || |||||||||||||||||||||||||| |||| || |||||||||| |||||||||||||||||| |
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| T |
4385284 |
cgcaatcgctcgacacgcttcctcctcaatattattattatcaccactagctattgacccacctctttttttcttgaaaatatcttcaaaatcaaaactt |
4385383 |
T |
|
| Q |
299 |
tcttcatcaaaatcatttccttttctt |
325 |
Q |
| |
|
|| || ||| || |||| |||||||| |
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|
| T |
4385384 |
tcaccaccaacattatttgcttttctt |
4385410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 53 - 210
Target Start/End: Complemental strand, 5725298 - 5725141
Alignment:
| Q |
53 |
aacttaacttcttccctcaaatacttccctttaatctcatcaaaagacggcgggacaaaccctacaccacatctcgaaaccatatcacacattctaacaa |
152 |
Q |
| |
|
|||| |||||| ||| ||||||| ||||||||||||||||| |||||||| || ||||||||||||| | | ||||||||||||||||| ||| || |
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| T |
5725298 |
aactcaacttcatccgtcaaatatttccctttaatctcatcgaaagacggtggcttaaaccctacaccatgttttgaaaccatatcacacatagtaataa |
5725199 |
T |
|
| Q |
153 |
actccttactcttcacagccttcatcggtattgcattgttgtagaaaaacctcgcaat |
210 |
Q |
| |
|
| || | |||||| || || | | | |||| ||||||||||||||||||| ||||| |
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|
| T |
5725198 |
attcatcactctttaccgcatcaagccgtatgacattgttgtagaaaaaccttgcaat |
5725141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 32 - 102
Target Start/End: Original strand, 4370382 - 4370452
Alignment:
| Q |
32 |
tcttccaaagcttcattcaccaacttaacttcttccctcaaatacttccctttaatctcatcaaaagacgg |
102 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||| ||||||| |||||| ||||||||||| ||||||| |
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| T |
4370382 |
tcttccaaagcttcatttgtcaacttaacttcatccgtcaaatatttccctctaatctcatcataagacgg |
4370452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 102
Target Start/End: Original strand, 4365991 - 4366058
Alignment:
| Q |
35 |
tccaaagcttcattcaccaacttaacttcttccctcaaatacttccctttaatctcatcaaaagacgg |
102 |
Q |
| |
|
|||||||||||||| |||||||||||| ||| ||||||| |||||| ||||||||||| ||||||| |
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| T |
4365991 |
tccaaagcttcatttgtcaacttaacttcatccgtcaaatatttccctctaatctcatcataagacgg |
4366058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 4370528 - 4370577
Alignment:
| Q |
178 |
cggtattgcattgttgtagaaaaacctcgcaatcgctctacacgcttcct |
227 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||| ||| ||||||| |
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| T |
4370528 |
cggtatggcattgttgtagaaaaaccttgcaatcgcttgacatgcttcct |
4370577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 215
Target Start/End: Complemental strand, 4414322 - 4414158
Alignment:
| Q |
52 |
caacttaacttcttccctcaaatacttcccttt-aatctcatcaaaagacggcgggacaaaccctacaccacatctcgaaaccatatcacacattctaac |
150 |
Q |
| |
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|||||||||||||||| |||||| |||||||| || ||||||||||| || || ||||| |||| ||| ||| ||||||| | |||||| ||| |
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| T |
4414322 |
caacttaacttcttccgccaaatatttcccttttaaggtcatcaaaagaaggtggcacaaatcctaacccatgtcttgaaaccaactgacacatagtaat |
4414223 |
T |
|
| Q |
151 |
aaactccttactcttcacagccttcatcggtattgcattgttgtagaaaaacctcgcaatcgctc |
215 |
Q |
| |
|
|||||| | |||||| || || | | |||||| ||||||||||||||||||| |||| ||||| |
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|
| T |
4414222 |
aaactcatcactctttaccgcatcaagcggtatgtcattgttgtagaaaaaccttgcaaccgctc |
4414158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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