View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20598_low_3 (Length: 815)
Name: NF20598_low_3
Description: NF20598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20598_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 784; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 784; E-Value: 0
Query Start/End: Original strand, 1 - 796
Target Start/End: Complemental strand, 50110719 - 50109924
Alignment:
| Q |
1 |
ctggtaagtgcacaattcctacaggaaaggtgtgccccagtggaacaggacctggttgggtatgttgcttagattgcaaaaacatcacaagcacacggtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50110719 |
ctggtaagtgcacaattcctacaggaaaggtgtgccccagtggaacaggacctggttgggtatgttgcttagattgcaaaaacatcacaagcacacggtg |
50110620 |
T |
|
| Q |
101 |
ggatgatcctccctataaaattaatgcttcaggattacaagctcctataggtttcaaaactatagccacaagtgcagtccactataatggcattttggaa |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50110619 |
ggatgatcctccctacaaaattaatgcttcaggattacaagctcctattggtttcaaaactatagccacaagtgcagtccactataatggcattttggaa |
50110520 |
T |
|
| Q |
201 |
tatgatgctcatagtatttatggtttttctcaaaccattgcaactcacaaggcccttcaagggcttcaaggaaaaaggccttttattttgacccgctcta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50110519 |
tatgatgctcatagtatttatggtttttctcaaaccattgcaactcacaaggcccttcaagggcttcaaggaaaaaggccttttattttgacccgctcta |
50110420 |
T |
|
| Q |
301 |
cttatgttggttctggcaaatatgcagcacattggacaggtgacaatcagggtacatgggagaacttgagatactcaatatctactatgctgaattttgg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50110419 |
cttatgttggttctggcaaatatgcagcacattggacaggtgacaatcagggtacatgggagaacttgagatactcaatatctactatgctgaattttgg |
50110320 |
T |
|
| Q |
401 |
aatatttggtgtgccaatggttggttcagatatatgtggtttctatccacaacccactgaagagctttgcaataggtggattgaagttggtgctttctat |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50110319 |
aatatttggtgtgccaatggttggttcagatatatgtggtttctatccacaacccactgaagagctttgcaataggtggattgaagttggtgctttctat |
50110220 |
T |
|
| Q |
501 |
ccattttcaagggaccatgcaaactactactctcctagacaagaactttaccagtgggagacggtagccgaatcagctagaaatgcattggggatgaggt |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50110219 |
ccattttcaagggaccatgcaaactactactctcctagacaagaactttaccagtgggagacggtagccgaatcagctagaaatgcattggggatgaggt |
50110120 |
T |
|
| Q |
601 |
ataagctcctaccctatctgtacaccctaaactatgaggctcatattagtggatccccaattgctaggcctcttttcttctcattcccaacttatattga |
700 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50110119 |
ataagctcctaccctatctgtacaccctaaactatgaggctcatattagtggagccccaattgctaggcctcttttcttctcattcccaacttatattga |
50110020 |
T |
|
| Q |
701 |
atgttatagtctaagcacccaattcttacttgggagcagcctaatgatttctcctgttcttgagcaagggaaaacagaagttgatgcactctttcc |
796 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50110019 |
atgttatagtctaagcacccaattcttacttgggagcagcctaatgatttctcctgttcttgagcaagggaaaacagaagttgatgcactctttcc |
50109924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 182; E-Value: 6e-98
Query Start/End: Original strand, 456 - 797
Target Start/End: Complemental strand, 50120254 - 50119913
Alignment:
| Q |
456 |
actgaagagctttgcaataggtggattgaagttggtgctttctatccattttcaagggaccatgcaaactactactctcctagacaagaactttaccagt |
555 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| || || ||||| ||| ||| | || |||||||||||||||||||| | |
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| T |
50120254 |
actgaagagctttgtaataggtggattgaagttggtgctttctatcctttctcgagggatcattcaagtgtcatttcccctagacaagaactttaccaat |
50120155 |
T |
|
| Q |
556 |
gggagacggtagccgaatcagctagaaatgcattggggatgaggtataagctcctaccctatctgtacaccctaaactatgaggctcatattagtggatc |
655 |
Q |
| |
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||||| | ||||| ||||||||||||||||| |||||||||||||||||||| ||||||||| | ||||| ||||||| |||||||||||||||||| | |
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| T |
50120154 |
gggagtcagtagctgaatcagctagaaatgccttggggatgaggtataagcttctaccctatttttacacaataaactacgaggctcatattagtggagc |
50120055 |
T |
|
| Q |
656 |
cccaattgctaggcctcttttcttctcattcccaacttatattgaatgttatagtctaagcacccaattcttacttgggagcagcctaatgatttctcct |
755 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||||||||||||| | || ||||| || ||||||||||||||||| |||||||||||||| |
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| T |
50120054 |
tccaattgctaggcctcttttcttctcatttccaaattatattgaatgttatggcctcagcactcagttcttacttgggagcagtttaatgatttctcct |
50119955 |
T |
|
| Q |
756 |
gttcttgagcaagggaaaacagaagttgatgcactctttcct |
797 |
Q |
| |
|
|||||||||| |||||||||||||||| | ||||| |||||| |
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| T |
50119954 |
gttcttgagccagggaaaacagaagttaaagcactttttcct |
50119913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 62 - 449
Target Start/End: Complemental strand, 50120675 - 50120288
Alignment:
| Q |
62 |
atgttgcttagattgcaaaaacatcacaagcacacggtgggatgatcctccctataaaattaatgcttcaggattacaagct-cctataggtttcaaaac |
160 |
Q |
| |
|
||||||||||||||| | |||||||||||||||| | |||||||||||||| || ||||| |||||||||||| || || | || ||||| | |||||| |
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|
| T |
50120675 |
atgttgcttagattgtacaaacatcacaagcacaagatgggatgatcctccttacaaaatcaatgcttcaggaa-acgagattccaatagggtacaaaac |
50120577 |
T |
|
| Q |
161 |
tatagccacaagtgcagtccactataatggcattttggaatatgatgctcatagtatttatggtttttctcaaaccattgcaactcacaaggcccttcaa |
260 |
Q |
| |
|
||||||||| |||||||| || |||||||| | ||||||||||||||||||||| ||| |||||| ||| || |||||||||| |||||||| ||| |
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|
| T |
50120576 |
tatagccactagtgcagttcattataatggtgtgttggaatatgatgctcatagtctttttggtttctctgaagccattgcaacacacaaggcactttcc |
50120477 |
T |
|
| Q |
261 |
gggcttcaaggaaaaaggccttttattttgacccgctctacttatgttggttctggcaaatatgcagcacattggacaggtgacaatcagggtacatggg |
360 |
Q |
| |
|
| |||||||| ||||| || || ||||| | || || |||||||| || || ||||||||||| || ||||||||||||||||| | || ||||||| |
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|
| T |
50120476 |
gaacttcaaggtaaaagaccattcgttttgtctcgttcgacttatgtaggatcaggcaaatatgctgctcattggacaggtgacaacaaaggaacatggg |
50120377 |
T |
|
| Q |
361 |
agaacttgagatactcaatatctactatgctgaattttggaatatttggtgtgccaatggttggttcagatatatgtggtttctatcca |
449 |
Q |
| |
|
|| | || ||||| | |||||||| || || || |||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
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|
| T |
50120376 |
aggatttaagatatactatatctaccatcctcaactttggaatatttggcatgccaatggttggggcagatatatgtggtttctatcca |
50120288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 41 - 694
Target Start/End: Original strand, 23934123 - 23934776
Alignment:
| Q |
41 |
tggaacaggacctggttgggtatgttgcttagattgcaaaaacatcacaagcacacggtgggatgatcctccctataaaattaatgcttcaggattacaa |
140 |
Q |
| |
|
|||||||||||| || ||| |||||||||| || ||||| |||||||| | ||| | ||||| |||||||| || ||||| || ||||| ||| | ||| |
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| T |
23934123 |
tggaacaggaccaggatggatatgttgcttggactgcaagaacatcaccaaaacaagatgggacgatcctccttacaaaatcaacgcttcgggaattcaa |
23934222 |
T |
|
| Q |
141 |
gctcctataggtttcaaaactatagccacaagtgcagtccactataatggcattttggaatatgatgctcatagtatttatggtttttctcaaaccattg |
240 |
Q |
| |
|
||||| || || | |||||| |||||||| |||||| ||||||||| || | ||||| ||||||||||||||||| |||||||| || ||| || | | |
|
|
| T |
23934223 |
gctccaatcggatacaaaacaatagccaccagtgcaacccactataacggtgtcttggagtatgatgctcatagtatctatggtttctcgcaatccgtcg |
23934322 |
T |
|
| Q |
241 |
caactcacaaggcccttcaagggcttcaaggaaaaaggccttttattttgacccgctctacttatgttggttctggcaaatatgcagcacattggacagg |
340 |
Q |
| |
|
|||||||||||| |||| || ||| |||| |||||||||||||||||| | || || |||||||||||||| ||||||||||| ||||||||||| || |
|
|
| T |
23934323 |
caactcacaagggtcttcttggacttgaaggcaaaaggccttttattttgtcgcggtccacttatgttggttcgggcaaatatgctgcacattggaccgg |
23934422 |
T |
|
| Q |
341 |
tgacaatcagggtacatgggagaacttgagatactcaatatctactatgctgaattttggaatatttggtgtgccaatggttggttcagatatatgtggt |
440 |
Q |
| |
|
||||||||| || ||||||||||| || || || |||||||| || ||| ||||||| || ||||||||||| |||||||||||||| || |||||||| |
|
|
| T |
23934423 |
tgacaatcaaggaacatgggagaatttaaggtattcaatatccacaatgttgaatttcggtatatttggtgttccaatggttggttctgacatatgtgga |
23934522 |
T |
|
| Q |
441 |
ttctatccacaacccactgaagagctttgcaataggtggattgaagttggtgctttctatccattttcaagggaccatgcaaactactactctcctagac |
540 |
Q |
| |
|
|| || |||||||| |||||||| || |||||||| ||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| || |||| |
|
|
| T |
23934523 |
ttttacccacaaccaactgaagaactatgcaatagatggattgaagttggtgctttctacccattttcaagagatcatgcaaactactactccccgagac |
23934622 |
T |
|
| Q |
541 |
aagaactttaccagtgggagacggtagccgaatcagctagaaatgcattggggatgaggtataagctcctaccctatctgtacaccctaaactatgaggc |
640 |
Q |
| |
|
|||| |||||||| ||||| | ||||| ||||||| |||||||| || || || ||||| ||| | ||||| ||||| |||||| |||||||||| || |
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|
| T |
23934623 |
aagagctttaccaatgggattcagtagctcaatcagcaagaaatgctttaggtataaggtacaagattctaccgtatctttacaccttaaactatgaagc |
23934722 |
T |
|
| Q |
641 |
tcatattagtggatccccaattgctaggcctcttttcttctcattcccaactta |
694 |
Q |
| |
|
|||| |||||||||| |||||||| || || ||||||||| | |||||| |||| |
|
|
| T |
23934723 |
tcatgttagtggatcaccaattgcaagaccacttttcttcactttcccatctta |
23934776 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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