View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20598_low_31 (Length: 252)
Name: NF20598_low_31
Description: NF20598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20598_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 17 - 233
Target Start/End: Complemental strand, 5625825 - 5625609
Alignment:
| Q |
17 |
cagagatcatacaattacacaaattcaacacaaaatttaagctagacatgtcccttccaacagcatatcaagagcaccttccttcatcaccacaatggct |
116 |
Q |
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| T |
5625825 |
cagagatcatacaattacacaaattcaacacaaaatttaagctagacatgtcccttccaacagcatatcaagagcaccttccttcatcaccacaatggct |
5625726 |
T |
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| Q |
117 |
aaacaaaggagacaactcatggcaaatgacagcatcaaccctagttggcctacaaagcatgccaggtcttgtaattctctatgcaagtatggtcaaaaag |
216 |
Q |
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| T |
5625725 |
aaacaaaggagacaactcatggcaaatgacagcatcaaccctagttggtctacaaagcatgccaggtcttgtaattctctatgcaagtatggtcaaaaag |
5625626 |
T |
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| Q |
217 |
aaatgggctatgaattc |
233 |
Q |
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||||||||||||||||| |
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| T |
5625625 |
aaatgggctatgaattc |
5625609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 101 - 233
Target Start/End: Complemental strand, 25671533 - 25671401
Alignment:
| Q |
101 |
catcaccacaatggctaaacaaaggagacaactcatggcaaatgacagcatcaaccctagttggcctacaaagcatgccaggtcttgtaattctctatgc |
200 |
Q |
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| T |
25671533 |
catcaccagaatggttaaacaaaggagacaacgcatggcaaatgacagcagcaacactagttggtttacaaagcatgccaggactagtaattctctatgc |
25671434 |
T |
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| Q |
201 |
aagtatggtcaaaaagaaatgggctatgaattc |
233 |
Q |
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| T |
25671433 |
aagcatagtgaaaaagaaatgggcagtgaattc |
25671401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 116 - 225
Target Start/End: Complemental strand, 39726979 - 39726870
Alignment:
| Q |
116 |
taaacaaaggagacaactcatggcaaatgacagcatcaaccctagttggcctacaaagcatgccaggtcttgtaattctctatgcaagtatggtcaaaaa |
215 |
Q |
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|||||||||||||||||||||||||||||| | || | ||||| ||||| | |||||||||||||| || || || ||||||| || || || ||||| |
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| T |
39726979 |
taaacaaaggagacaactcatggcaaatgatatcagctacccttgttggaattcaaagcatgccaggactagttatcctctatggcagcatagtgaaaaa |
39726880 |
T |
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| Q |
216 |
gaaatgggct |
225 |
Q |
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|||||||||| |
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| T |
39726879 |
gaaatgggct |
39726870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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