View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20598_low_35 (Length: 243)
Name: NF20598_low_35
Description: NF20598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20598_low_35 |
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| [»] scaffold0135 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 96 - 162
Target Start/End: Original strand, 29042132 - 29042198
Alignment:
| Q |
96 |
agtaacatttacttattgtcttgatttgtggaaaatagtaattttaaaccagtaacaacacagatac |
162 |
Q |
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| T |
29042132 |
agtaacatttactgattgtctcgatttgtgtaaaatagtaattttaaaccagtaacaacacagatac |
29042198 |
T |
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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 35
Target Start/End: Complemental strand, 13849865 - 13849835
Alignment:
| Q |
5 |
tagatatttattgcagagagagaaacatatg |
35 |
Q |
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| T |
13849865 |
tagatatttattgcagagagagaaacatatg |
13849835 |
T |
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Target: scaffold0135 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0135
Description:
Target: scaffold0135; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 35
Target Start/End: Complemental strand, 30840 - 30810
Alignment:
| Q |
5 |
tagatatttattgcagagagagaaacatatg |
35 |
Q |
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| T |
30840 |
tagatatttattgcagagagagaaacatatg |
30810 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 35
Target Start/End: Complemental strand, 9220189 - 9220159
Alignment:
| Q |
5 |
tagatatttattgcagagagagaaacatatg |
35 |
Q |
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| T |
9220189 |
tagatatttattgcagagagagaaacatatg |
9220159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 35
Target Start/End: Original strand, 12721533 - 12721563
Alignment:
| Q |
5 |
tagatatttattgcagagagagaaacatatg |
35 |
Q |
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| T |
12721533 |
tagatatttattgcagagagagaaacatatg |
12721563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 35
Target Start/End: Original strand, 43808992 - 43809022
Alignment:
| Q |
5 |
tagatatttattgcagagagagaaacatatg |
35 |
Q |
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| T |
43808992 |
tagatatttattgcagagagagaaacatatg |
43809022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 35
Target Start/End: Original strand, 3720774 - 3720803
Alignment:
| Q |
6 |
agatatttattgcagagagagaaacatatg |
35 |
Q |
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| T |
3720774 |
agatatttattgcagagagagaaacatatg |
3720803 |
T |
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