View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20598_low_36 (Length: 241)

Name: NF20598_low_36
Description: NF20598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20598_low_36
NF20598_low_36
[»] chr1 (2 HSPs)
chr1 (1-227)||(50110695-50110921)
chr1 (27-227)||(50120744-50120944)
[»] chr5 (1 HSPs)
chr5 (7-227)||(23933881-23934101)


Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 50110695 - 50110921
Alignment:
Q  1 cctgtaggaattgtgcacttaccagagcaaaaatttgaagcttcattcatgtcaatccataagccatcaactgggacaagttcatggaagcggcgaatct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50110695 cctgtaggaattgtgcacttaccagagcaaaaatttgaagcttcattcatgtcaatccataagccatcaactgggacaagttcatggaagcggcgaatct 50110794  T
Q  101 catcaccccaccaagaaactgttttaggattgagaaaatcaggaaagtacactgctcccggccaaacttgtgccatgaatggttcaccctcatgcttgat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  50110795 catcaccccaccaagaaactgttttaggattgagaaaatcaggaaagtacactgctcctggccaaacttgtgccaagaatggttcaccctcatgcttgat 50110894  T
Q  201 aaaaacatcattagccatacccctttg 227  Q
    |||||||||||||||||||||||||||    
T  50110895 aaaaacatcattagccatacccctttg 50110921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 27 - 227
Target Start/End: Original strand, 50120744 - 50120944
Alignment:
Q  27 gcaaaaatttgaagcttcattcatgtcaatccataagccatcaactgggacaagttcatggaagcggcgaatctcatcaccccaccaagaaactgtttta 126  Q
    ||||||||||||| |||||||||||||||||||||| |||||||  || ||||||||||||||||||||||| |||||  ||||||||||||||||||||    
T  50120744 gcaaaaatttgaaacttcattcatgtcaatccataatccatcaataggaacaagttcatggaagcggcgaatttcatcggcccaccaagaaactgtttta 50120843  T
Q  127 ggattgagaaaatcaggaaagtacactgctcccggccaaacttgtgccatgaatggttcaccctcatgcttgataaaaacatcattagccataccccttt 226  Q
    ||||||||||||||||||||||| || || || ||||||||    ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  50120844 ggattgagaaaatcaggaaagtaaacagcccctggccaaaccatagccatgaatggttcaccttcatacttgataaaaacatcattagccataccccttt 50120943  T
Q  227 g 227  Q
    |    
T  50120944 g 50120944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 23934101 - 23933881
Alignment:
Q  7 ggaattgtgcacttaccagagcaaaaatttgaagcttcattcatgtcaatccataagccatcaactgggacaagttcatggaagcggcgaatctcatcac 106  Q
    |||||| |||| |||||||| || |||||||||||||| |||||||||||||||| ||| ||||| || || ||||||||||||||||| ||||| ||      
T  23934101 ggaattttgcatttaccagaacagaaatttgaagcttcgttcatgtcaatccataggccgtcaacaggtacgagttcatggaagcggcggatctcgtcga 23934002  T
Q  107 cccaccaagaaactgttttaggattgagaaaatcaggaaagtacactgctcccggccaaacttgtgccatgaatggttcaccctcatgcttgataaaaac 206  Q
    ||||||||   || || || ||||||||||||||||||||||  || || || ||||| ||||| |||| ||| ||||| || || | |||||| |||||    
T  23934001 cccaccaatttacagtctttggattgagaaaatcaggaaagtttaccgcccctggccacacttgagccaagaaaggttcgccttcgtacttgatgaaaac 23933902  T
Q  207 atcattagccatacccctttg 227  Q
    ||| || || | |||||||||    
T  23933901 atcgttggctaaacccctttg 23933881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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