View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20598_low_37 (Length: 237)
Name: NF20598_low_37
Description: NF20598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20598_low_37 |
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Alignment Details
Target: chr7 (Bit Score: 121; Significance: 4e-62; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 6111359 - 6111187
Alignment:
| Q |
1 |
tagtggaggagcttcaagaattcaaacacaccttggaggcaaaggaggaggcattaggagatgctccaattatcatgaaggagttcacaacaatatggca |
100 |
Q |
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| T |
6111359 |
tagtggaggagcttctagaattcaaacacaccttggtggcaaaggaggaggcattaggcgatgctccaattatcacgaaggagttcacaacaatatggca |
6111260 |
T |
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| Q |
101 |
tccacttcaaataatccaccaccagaagctgtcattcatagactttattcaacacaagatcgaggtaaatgag |
173 |
Q |
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| T |
6111259 |
tccacttcaagtaatccaccagaagctgctgtgattaatagagtttattcaacacaagatcaaggtaaatgag |
6111187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 46 - 171
Target Start/End: Complemental strand, 6183419 - 6183291
Alignment:
| Q |
46 |
aggaggcattaggagatgctccaattatcatgaaggagttcacaacaatatggcatccacttcaaataatccaccaccagaagc---tgtcattcataga |
142 |
Q |
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| T |
6183419 |
aggaggcattaggcgatgctccaaatatcatgaaggagtttacaacaacatggcatccacttcaagtaatccaccactagaagctcatgtgattaataga |
6183320 |
T |
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| Q |
143 |
ctttattcaacacaagatcgaggtaaatg |
171 |
Q |
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| T |
6183319 |
ctttattcaacacaatatcaaggtaaatg |
6183291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 77 - 183
Target Start/End: Complemental strand, 6209843 - 6209737
Alignment:
| Q |
77 |
gaaggagttcacaacaatatggcatccacttcaaataatccaccaccagaagctgtcattcatagactttattcaacacaagatcgaggtaaatgagaat |
176 |
Q |
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| T |
6209843 |
gaaggagttcacaacaatatggcatccacttcaagtaatccaccatcggaagttgcggttaatagactttattcaacacaatatcgaggtaaatgataat |
6209744 |
T |
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| Q |
177 |
atgtttt |
183 |
Q |
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|||||| |
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| T |
6209743 |
ctgtttt |
6209737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 38 - 122
Target Start/End: Complemental strand, 6250973 - 6250889
Alignment:
| Q |
38 |
ggcaaaggaggaggcattaggagatgctccaattatcatgaaggagttcacaacaatatggcatccacttcaaataatccaccac |
122 |
Q |
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| T |
6250973 |
ggcaaaggaggaggcattaagccatgctccaaatatcatgaaggagtttacaacaacatggcatccacttcaagtaatccaccac |
6250889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 75 - 121
Target Start/End: Complemental strand, 6090280 - 6090234
Alignment:
| Q |
75 |
atgaaggagttcacaacaatatggcatccacttcaaataatccacca |
121 |
Q |
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| T |
6090280 |
atgaaggagttcacaacaatatggcatccacttcaagtaatccacca |
6090234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 119
Target Start/End: Complemental strand, 6102132 - 6102091
Alignment:
| Q |
78 |
aaggagttcacaacaatatggcatccacttcaaataatccac |
119 |
Q |
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| T |
6102132 |
aaggacttcgcaacaatatggcatccacttcaactaatccac |
6102091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 6209897 - 6209861
Alignment:
| Q |
38 |
ggcaaaggaggaggcattaggagatgctccaattatc |
74 |
Q |
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| T |
6209897 |
ggcaaaggtggaggcattaggcgatgctccaattatc |
6209861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 170
Target Start/End: Complemental strand, 6249520 - 6249488
Alignment:
| Q |
138 |
atagactttattcaacacaagatcgaggtaaat |
170 |
Q |
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| T |
6249520 |
atagactttattcaacacaatatcgaggtaaat |
6249488 |
T |
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