View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20598_low_6 (Length: 535)
Name: NF20598_low_6
Description: NF20598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20598_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 472; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 15 - 515
Target Start/End: Original strand, 4056156 - 4056656
Alignment:
| Q |
15 |
atcagcacctctcgcataaatgccacaaaaacccactagggttttgaccttaaatccatgtttagttagtgtacaaaattctacctaccaatagaatacc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4056156 |
atcagcacctctcgcataaatgccacaaaaacccactagggttttgaccttaaatccatgtttagttagtgtacaaaattctacctaccaatagaatacc |
4056255 |
T |
|
| Q |
115 |
atagaagagccaacagaaacgaggaaaccgacacatcaaatacaccaaagagaaaatctaacgcacaaagttaacgcaccgaggtatagtccctttaagg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4056256 |
atagaagagccaacagaaacgaggaaaccgacacatcaaatacaccaaagagaaaatctaacgcacaaagttaacgcaccgaggtatagtccctttaagg |
4056355 |
T |
|
| Q |
215 |
taggtgcatgcatgtaggacctttggcaagcgttactagttcaagcaaggcattccttataaccacgtcctaatttgctcattttttattctaataaggt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4056356 |
taggtgcatgcatgtaggacctttggcaagcgttactagttcaagcaaggcattccttataaccacgtcctaatttgctcattttttattctaataaggt |
4056455 |
T |
|
| Q |
315 |
aaaacagtcccaccaacggttnnnnnnnttataaaacaaacaggtacatctttggcgcccttcttcgattatagatacaaatcattagcacctctcgcat |
414 |
Q |
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||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4056456 |
aaaacagtcccgccaacggttaataaaattataaaacaaacaggtacatctttggcgcctttcttcgattatagatacaaatcattagcacctctcgcat |
4056555 |
T |
|
| Q |
415 |
taataccccccaaaaccctctaaggtttttaccattaatcaacctttaaccacaccatactcccctcttctcaaaaaccttgaccttagataaaaaccat |
514 |
Q |
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| T |
4056556 |
taataccccccaaaaccctctaaggtttttaccattaatcaacctttaaccacaccatactcccctcttctcaaaaaccttgaccttagataaaaaccat |
4056655 |
T |
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| Q |
515 |
a |
515 |
Q |
| |
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| |
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|
| T |
4056656 |
a |
4056656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 109 - 268
Target Start/End: Original strand, 4055856 - 4056015
Alignment:
| Q |
109 |
aataccatagaagagccaacagaaacgaggaaaccgacacatcaaatacaccaaagagaaaatctaacgcacaaagttaacgcaccgaggtatagtccct |
208 |
Q |
| |
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||||| ||||||||| |||| ||| || |||| ||||||||| |||| |||||||| ||||||| |||| ||| ||||||| |||||| | |||||| |
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| T |
4055856 |
aatacaatagaagaggtaacaaaaaagaagaaattgacacatcagatacgccaaagagtgaatctaaagcaccaaggtaacgcatcgaggtgttgtccct |
4055955 |
T |
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| Q |
209 |
ttaaggtaggtgcatgcatgtaggacctttggcaagcgttactagttcaagcaaggcatt |
268 |
Q |
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|||| ||||||||||| | ||| ||||| ||||| |||||||||||| ||||||||| |
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| T |
4055956 |
ctaagttaggtgcatgcccatgggaactttgacaagcattactagttcaaacaaggcatt |
4056015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 17402953 - 17402897
Alignment:
| Q |
15 |
atcagcacctctcgcataaatgccacaaaaacccactagggttttgaccttaaatcca |
72 |
Q |
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||||||| |||||||||||||||||| ||||||| ||||||||||||||||| ||||| |
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| T |
17402953 |
atcagcatctctcgcataaatgccac-aaaaccctctagggttttgaccttagatcca |
17402897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 235 - 267
Target Start/End: Complemental strand, 17403125 - 17403093
Alignment:
| Q |
235 |
ctttggcaagcgttactagttcaagcaaggcat |
267 |
Q |
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|||||||||||||| |||||||||||||||||| |
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| T |
17403125 |
ctttggcaagcgtttctagttcaagcaaggcat |
17403093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 87 - 196
Target Start/End: Original strand, 45866934 - 45867043
Alignment:
| Q |
87 |
acaaaattctacctaccaatagaataccatagaagagccaacagaaacgaggaaaccgacacatcaaatacaccaaagagaaaatctaacgcacaaagtt |
186 |
Q |
| |
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|||||| ||||||||||||||||| || |||||| ||| |||| ||| ||||||||||| |||||||||||| |||||| ||| |||| ||| ||| | |
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| T |
45866934 |
acaaaaatctacctaccaatagaacacaatagaatagctaacaaaaaagaggaaaccgatgcatcaaatacactaaagagtgaatttaacacaccaaggt |
45867033 |
T |
|
| Q |
187 |
aacgcaccga |
196 |
Q |
| |
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||| |||||| |
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| T |
45867034 |
aacacaccga |
45867043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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