View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20598_low_7 (Length: 496)
Name: NF20598_low_7
Description: NF20598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20598_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 20 - 263
Target Start/End: Complemental strand, 275801 - 275554
Alignment:
| Q |
20 |
gattgaacacaaagcatatgcaagagttggattgttaggtaatccaagcgatgtatattacggcaatactatcgctttcagtatttcgaatttctttgcc |
119 |
Q |
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| T |
275801 |
gattgaacacaaagcatatgcaagagttggattgttaggaaatccaagcgatgtatattacggcaatactatcgctttcagtatttccaatttctttgcc |
275702 |
T |
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| Q |
120 |
accgttaagctcattccttccattgaactcatcattcaacctcatcctactcatgatcttgtcaacttctcttccaatcatcaattggta----tctctc |
215 |
Q |
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| T |
275701 |
accgttaagctcattccttccattgaactcatcattcaacctcatcctactcatgatcttgtcaacttctcttccaatcatcaattggtatatttctctc |
275602 |
T |
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| Q |
216 |
tttcattttcatttgcatgtccatcttttgttctcattatcatcatct |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
275601 |
tttcattttcatttgcatgtccatcttttgttctcattatcatcatct |
275554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 328 - 491
Target Start/End: Complemental strand, 275534 - 275370
Alignment:
| Q |
328 |
attaatgcatgtt-gttttatgatatgtaggttgataggataaatgctgaaggttattatggaggagttcgattgcttatggctatttataaagtttttt |
426 |
Q |
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||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
275534 |
attaatgcatgtttgtgttatgatatgcaggttgataggataaatgctgaaggttattatggaggagttcgattgcttatggctatttataaagtttttt |
275435 |
T |
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| Q |
427 |
ataattattgtaaagataataatattcatcttcatcataccaatttcactctttcctatgctact |
491 |
Q |
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| T |
275434 |
ataattattgtaaagataataatattcatcttcatcataccaatttcactctttcctatgatact |
275370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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