View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20598_low_9 (Length: 461)
Name: NF20598_low_9
Description: NF20598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20598_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 126 - 445
Target Start/End: Original strand, 17771639 - 17771958
Alignment:
| Q |
126 |
cttatggaggaaataagttcgacggttgcagtgccatttttaattgggaatttaatacaaaaagagtcaacagtgacaaatcacatggaaataactggtt |
225 |
Q |
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| T |
17771639 |
cttatggaggaaataagttcgacggttgcagtgccattttcaattgggaatttaatacaaaaagagtcaacagtgacaaatcacatggaaataactggtt |
17771738 |
T |
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| Q |
226 |
taaatcttatgacaaatacatcatcagttttaatattaaatcctgcttcaattgagggttgtcagtctttttctgttggaagtgttgaagacggcgacgc |
325 |
Q |
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| T |
17771739 |
taaatcttatgataaatacatcatcagttttaatattaaatcctgcttcaattgagggttgtcagtctttttctgttggaagtggtgaagacggcgacgc |
17771838 |
T |
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| Q |
326 |
ggatattagtctacaacatcaacaaatatcagtgtctctagaggttaaggaggatcaagttgcagctgaacctgtctcagaaatggttcttgaaagtgac |
425 |
Q |
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| T |
17771839 |
ggatattagtcctcaacatcaacaaatatcagtgtctctagaggttaaggaggatcaagttgcagctgaacctgtctcagaaatggttcttgaaagtgac |
17771938 |
T |
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| Q |
426 |
agttttgaaagaaatgatga |
445 |
Q |
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| T |
17771939 |
agttttgaaagaaatgatga |
17771958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 17771574 - 17771487
Alignment:
| Q |
4 |
actcttctttagtaacatttttctt-agtaacacttcaatttttgttacataaacaccaaaaagatcttgcaaagttgcaactatact |
90 |
Q |
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| T |
17771574 |
actcttctttagtaacacttttctttagtaacacttcaatttttgttacataaacaccaaaaagatcttgcaaagttgcaactatact |
17771487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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