View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20599_high_1 (Length: 439)
Name: NF20599_high_1
Description: NF20599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20599_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 14 - 430
Target Start/End: Original strand, 8514872 - 8515288
Alignment:
| Q |
14 |
tcatcactccttgacacaacaaaatctcaatcaagcatatgcagaacttcttgtgctaacatttcaatcaaatatccatttagcattgatgatggatgtg |
113 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8514872 |
tcattactccttgacacaacaaaatctcaatcaagcatatgcagaacttcttgtgctaacatttcaatcaaatatccatttagcattgatgatggatgtg |
8514971 |
T |
|
| Q |
114 |
gaagtccatactatagacacattctctcttgttccgactcagnnnnnnnnctcgaactccgaacaccttccggtcgatatgaagttcgtaacataagcta |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8514972 |
gaagtccatactatagacacattctctcttgttccgactcagaaaaaaaactcgaactccgaacaccttccggtcgatatgaagttcgtaacataagcta |
8515071 |
T |
|
| Q |
214 |
tgccgatcctcacattgttgtcactgatccattcatgtggaaatgtgaagacggggaaaattttcgaccaacacgaccatttagtttagacactagcaca |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8515072 |
tgccgatcctcacattgttgtcactgatccattcatgtggaaatgtgaagatggggaaaattttcgaccaacacgaccatttagtttagacactagcaca |
8515171 |
T |
|
| Q |
314 |
aaattgaagatctctacacaaaatgagtacatgtttttcaattgtagtgaaaaacatgtgattattcaaccaaagcctatgttttgtgaacattttcctg |
413 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8515172 |
aaattgaagctctctacacaaaatgagtacatgtttttcaattgtagtgaaaaacatgtgattattcaaccaaagcctatgttttgtgaacattttcctg |
8515271 |
T |
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| Q |
414 |
aacattgtgattcatct |
430 |
Q |
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| T |
8515272 |
aacattgtgattcatct |
8515288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 218 - 430
Target Start/End: Original strand, 55371067 - 55371279
Alignment:
| Q |
218 |
gatcctcacattgttgtcactgatccattcatgtggaaatgtgaagacggggaaaattttcgaccaacacgaccatttagtttagacactagcacaaaat |
317 |
Q |
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| T |
55371067 |
gatccacacattgtagtcactgatccattcatgtggaactgtgaagacggtgtcaattatcgaccaacaagaccatttagtttagacacaagcacacgtt |
55371166 |
T |
|
| Q |
318 |
tgaagatctctacacaaaatgagtacatgtttttcaattgtagtgaaaaacatgtgattattcaaccaaagcctatgttttgtgaacattttcctgaaca |
417 |
Q |
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| T |
55371167 |
tcaagctttcgtctcaaaatcagtatattttcttcaattgtagtgaagaaaaagttattgtaaaaccaaagcctgtgttttgtgaacaatttcctgaaca |
55371266 |
T |
|
| Q |
418 |
ttgtgattcatct |
430 |
Q |
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|||||||||||| |
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| T |
55371267 |
ctgtgattcatct |
55371279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 32 - 147
Target Start/End: Original strand, 55370884 - 55370999
Alignment:
| Q |
32 |
acaaaatctcaatcaagcatatgcagaacttcttgtgctaacatttcaatcaaatatccatttagcattgatgatggatgtggaagtccatactatagac |
131 |
Q |
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|||||||||||||| | | | || |||||||| |||| | |||| ||||| ||||||| ||| |||||||||||| |||||||||||||| || ||| |
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| T |
55370884 |
acaaaatctcaatccaccctttgtagaacttcatgtggttccattccaatccaatatcctttttccattgatgatggctgtggaagtccatattacagat |
55370983 |
T |
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| Q |
132 |
acattctctcttgttc |
147 |
Q |
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|||||| |||||||| |
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| T |
55370984 |
tcattctttcttgttc |
55370999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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