View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20599_high_4 (Length: 311)
Name: NF20599_high_4
Description: NF20599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20599_high_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 15 - 294
Target Start/End: Complemental strand, 21569668 - 21569389
Alignment:
| Q |
15 |
agaaaaaacatcatttttgttttagaatgaaaaagatagtgttgtagtttgaaaaacataccgaagcttatctgaatctttaccaaaagcaggggaaagt |
114 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21569668 |
agaaaaaacatcatttttgttttggaatgaaaaagatagtgttatagtttgaaaaacataccgaagcttatctgaatctttaccaaaagcaggggaaagt |
21569569 |
T |
|
| Q |
115 |
ttgaattggttaaaatcttgattattggtaagaagaagatattcaacccaaccaatatcaccattttgtccaattttcttgttaccatatccaaatggat |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
21569568 |
ttgaattggttaaaatcttgattattggtaagaagaagatattcaacccaaccaatatcaccattttgtccaattttcttgttaccatacccaaatggat |
21569469 |
T |
|
| Q |
215 |
tagctggtcctgctttctccttttgatcaatagacatagnnnnnnncttaacagcttcagattccaacaaagatatacat |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
21569468 |
tagctggtcctgctttctccttttgatcaatagacatagaaaaaaacttaacagcttcagattctaacaaagatatacat |
21569389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 145 - 215
Target Start/End: Original strand, 29877910 - 29877980
Alignment:
| Q |
145 |
agaagaagatattcaacccaaccaatatcaccattttgtccaattttcttgttaccatatccaaatggatt |
215 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||| ||||||| | ||||||||||| ||||||||||| |
|
|
| T |
29877910 |
agaagaaggtattcaacccaaccaacatcaccattgggtccaatccttttgttaccatacccaaatggatt |
29877980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University